Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120439.Seq
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    29   0.61 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.80 
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    28   1.9  
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    28   1.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   5.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.7  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.9  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   9.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   9.9  

>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 104 TLPRCRSPRCGRCWRSSSPTCRPSPARSS 190
           TL +  + +C R W   SP+C PSP  ++
Sbjct: 310 TLAKLVATQCHRLWLVQSPSCPPSPKNNA 338


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -3

Query: 161 SVTNSASIFRSEETGTSATLPWSTNSTCAVPPPGPRICSSTTAL 30
           S   + + F S  T TS     STN T  VPPP     S+TT +
Sbjct: 41  SANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTTTV 84


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 38  WCWNRFWG 61
           WCW RFWG
Sbjct: 384 WCWRRFWG 391


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 203 GKSSMTIWQATAGRSVTNSASIFRSEETGTSATLPWSTNST 81
           GKSS+   +A  G    +S S+FR      +A  PW  N+T
Sbjct: 621 GKSSLL--EACLGNMQKHSGSVFRCGSIAYAAQQPWILNAT 659


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 4   ALPPS--SEWHRAVVLEQILGPGGGTAHVLFVDHGNVAEV 117
           AL PS  S   R V+   +  PG GT     + HGNV EV
Sbjct: 441 ALTPSDLSRVARRVLTGNVSNPGNGTGKPTVLIHGNVDEV 480


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 176 ATAGRSVTNSASIFRSEETGTSATLPWSTNSTCAVPPPGPRICSST 39
           +T+    ++S  +  S    TS ++P + NST  V P  P   SST
Sbjct: 375 STSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST 420


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 203 GKSSMTIWQATAGRSVTNSASIFRSEETGTSATLPWSTNST 81
           GKSS+   +A  G    NS S+F+      +A  PW  ++T
Sbjct: 619 GKSSLL--EACMGNMYKNSGSVFQCGSLAYAAQQPWIFDAT 657


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 143 WRSSSPTCRPSPARSSLKISRNKQRPRCLRRRVGS 247
           W SSSP+  PS + S  ++  ++Q  R L+    S
Sbjct: 30  WNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSS 64


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
 Frame = +3

Query: 408 IWRRLRLQVRDVYCGNAFFIMYIYIEG*K*HLSFN*WSVLFGISINSSMFLKFN*VYSNQ 587
           ++  LR + +     +AF I + +I      L+   W  + G S+N ++  + N  + + 
Sbjct: 12  LYSSLRTRYKVYISMHAFAIWHRFIS----FLAIYLWPCIMG-SVNLNLQDRENEYFFDS 66

Query: 588 ITYIFFKFSTLSGSPVNLQKVSLKKRP--------FIPRCIYICIFRYACRSRIVFNFVL 743
           I YI +    L G    LQ+   +++P        F     +   F Y    +IV +FVL
Sbjct: 67  IQYIIYTSELLVGDH-ELQRSHHEEQPSLVYPSSSFSSTSKFWRYFAYLLSLQIVIDFVL 125

Query: 744 WALQKAIRDL 773
           + L  A+  L
Sbjct: 126 YKLSSAMASL 135


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 639 LQKVSLKKRPFIPRCIYICIFRYACRSRIVFNFVLWALQKAIRDLPANSHELNKS 803
           +QK+S+K   F P  +   +    C S  +FN +L  L+  IR  P N+ ++  S
Sbjct: 239 IQKLSIKPLAF-PNVLPQVLL--LCPSISIFNLILLHLRALIRSSPENAIKIGYS 290


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 5   HCRPPPNGTERWCWNRF 55
           H      GT  WCWN F
Sbjct: 569 HAYKSGEGTADWCWNHF 585


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -3

Query: 239  RAFASISAVACFGKSSMTIWQATAGRSVTNSASIFRSEETGTSATLPWSTNSTCAVPPPG 60
            +A A +++     K + T+  +    S   SA+   S  +  SA +  + +   AVPPP 
Sbjct: 1039 QAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPP 1098

Query: 59   P 57
            P
Sbjct: 1099 P 1099


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,575
Number of Sequences: 5004
Number of extensions: 65737
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)