Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120439.Seq
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 34 0.12
02_05_0600 - 30273080-30274692,30274709-30274949 33 0.37
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 32 0.48
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160 32 0.64
11_03_0128 - 10437407-10438049,10438097-10438272 31 0.85
06_03_0089 - 16475677-16476309 31 0.85
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 31 1.1
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 31 1.5
10_02_0061 - 4812903-4812940,4813140-4813536 31 1.5
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 31 1.5
01_06_0826 - 32252546-32253208 31 1.5
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 31 1.5
12_02_0887 + 24018847-24019281 30 2.0
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 29 3.4
10_08_1000 + 22130210-22130300,22130412-22130683,22130780-221309... 29 3.4
04_03_0241 - 13243938-13244453,13244538-13246334 29 3.4
03_05_0848 + 28196438-28196623 29 3.4
02_05_0876 - 32399066-32399920 29 3.4
03_02_0660 + 10244962-10245606 29 4.5
02_05_0073 - 25602268-25603182,25603273-25604190 29 4.5
07_01_0287 - 2094333-2094542,2094719-2095999 29 6.0
06_01_0855 + 6493239-6494420 29 6.0
10_06_0145 + 11215895-11216860 28 7.9
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 7.9
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 28 7.9
07_03_0015 - 12447947-12448393 28 7.9
>04_03_0813 - 19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 19 SEWHRAVVLEQILGPGGGTAHVLFVDHGNVAEVPVSSLRKMLAEFVTDLPAVA--CQIVI 192
+ W+RA+++ + G G V ++D+GN VP S LR + ++ +P +A C +
Sbjct: 848 NSWNRAMIIGECQGVEGPEFEVFYIDYGNQELVPHSCLRPINLS-ISSIPPLAKLCSLAF 906
Query: 193 EDFP 204
P
Sbjct: 907 VKVP 910
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +2
Query: 125 PRCGRCWRS-SSPTCRPSPARSSLK-----ISRNK-QRPRCLRRR 238
P C RCW S SS T PSP + L + R + RP CLRRR
Sbjct: 59 PLCRRCWASTSSSTGLPSPPPTGLAYYAAVVGRLRLHRPACLRRR 103
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +2
Query: 125 PRCGRCWRS-SSPTCRPSP 178
P C RCW S SSPT PSP
Sbjct: 143 PLCRRCWASTSSPTGLPSP 161
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +2
Query: 125 PRCGRCWRS-SSPTCRPSP 178
P C RCW S SSPT PSP
Sbjct: 467 PLCRRCWASTSSPTGLPSP 485
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 32.3 bits (70), Expect = 0.48
Identities = 20/87 (22%), Positives = 39/87 (44%)
Frame = +2
Query: 383 CLVKNYIIYMATSETSSAGCVLRKCVFYNVYLY*GVKVTFIF*LMVRFIWYQHQQFDVFK 562
CL+ + +Y + +S + + V L+ G K+ + + +WY H + +
Sbjct: 151 CLLSLFDMYDVIHKNNSQSSKETEYYSFYVLLHLGCKIPKMVDSLS--LWYGHLSASIIQ 208
Query: 563 IQLSLLESNNLYFFQIFNFKRFSCKFA 643
+ + + L F+ + NFKRF C A
Sbjct: 209 SKEMVFARSILRFYHLGNFKRFFCAIA 235
>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
Length = 306
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 56 WGPAAAPRTCCS---WTTATLPRCRSPRCGRCWRSSSPTCRPSP 178
W A AP +CC+ CR CGR + S P+ RP P
Sbjct: 224 WPAAPAPPSCCAPPPCYQGCYEGCRCGGCGRVYGYSVPSARPPP 267
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 31.5 bits (68), Expect = 0.85
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 38 WC-WNRFWGPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCR 169
WC +R P A+ + SW + SP C WR+++ CR
Sbjct: 226 WCPSSRCPSPTASSESLGSWGSGCRSHLSSPTCSSWWRTTALACR 270
>06_03_0089 - 16475677-16476309
Length = 210
Score = 31.5 bits (68), Expect = 0.85
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Frame = +2
Query: 59 GPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSP-TCRPSPARSSLKISRNKQRPRCLRR 235
G AAP ++TT RCR PR C R +SP T P P ++ S RC
Sbjct: 71 GATAAP----AFTTG-YARCRPPRPSICTRRNSPATPPPDPEEEEVRHSSRPAAQRCQVP 125
Query: 236 RVGS*AAGQGSRRPAARPGLRQ-AGRRHLRDP--RPGAP 343
V A + P R LR+ H P RP AP
Sbjct: 126 AVPYYCATELPCPPLLRRRLRRCCTGEHQAPPLLRPAAP 164
>06_03_0606 - 22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 59 GPAAAPRTCCSWTTATLP-RCRSPRCGRCWRSSSPTCRPSPARSSLKISRNKQRPRCLR- 232
G AAP T W+ P R + R +P + + ++R + R + LR
Sbjct: 1265 GGRAAPATLAPWSMRAAPAEARRQKGFNGGRRGAPATLAPRSGGAPAVARRQNRAKILRG 1324
Query: 233 RRVGS*AAGQGSRRPAARPGLR 298
+VG G G+R+P R G+R
Sbjct: 1325 EKVGGARRG-GARQPCWRRGMR 1345
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 77 RTCCSWTTATLPRCRSPRC 133
R CCSW LP+CR P+C
Sbjct: 287 RRCCSWKIK-LPKCRFPKC 304
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +2
Query: 23 NGTERWCWNRFWGPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSLKIS 202
NG+ RW W ++W A R S S GR S C P+PA S+ ++
Sbjct: 36 NGSTRWRWRQWWWLEATRRANSSTAVG-----GSMAVGRLLPRSRSPCAPAPALSAFTVT 90
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = +2
Query: 233 RRVGS*AAGQGSRRPAARPGLRQAGRRHLRDPRPGAPRSD 352
RR GS G GS P A+ L A R L DP G PR D
Sbjct: 811 RRSGSAHTGCGSAFPGAKSSL-PAVRSGLGDPNDGGPRGD 849
>01_06_0826 - 32252546-32253208
Length = 220
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 204 REIFND-DLAGDGRQVGDELRQHLPQRGDRHLGNVAVVHEQHVRGAAAGPQN 52
REIF D DGR GDELR+ GD A + GAA G ++
Sbjct: 74 REIFGHFDRDMDGRISGDELREFFASMGDDSGAAAAAAAAMGLDGAAGGGES 125
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 65 AAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSL 193
AAA CCS + R +PR ++S P RPSP RS++
Sbjct: 25 AAAAAACCSRRNISCARA-APRALEAPQASRPPPRPSPRRSAV 66
>12_02_0887 + 24018847-24019281
Length = 144
Score = 30.3 bits (65), Expect = 2.0
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 269 RRPAARPGLRQAGRRHLRDPRPGAPRSDDRVT-RD*MRCCLVKNYIIYMATSETSSAGCV 445
R AA PG+RQ R RD P P S VT RD R L K + +ATS S
Sbjct: 69 RPSAANPGIRQRHARWARDSTPVKPPSPSAVTPRDEERSRLDKR--VAIATSAKLSRRMT 126
Query: 446 LRK 454
R+
Sbjct: 127 SRR 129
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 59 GPAAAPRTCCSWTTATLPRCRSPR----CGRCWRSSSPTCRPSPAR--SSLKISRNKQRP 220
G A CC+ T++ R R P R R+ S T P P+R + IS ++ +P
Sbjct: 33 GSGWAADACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQP 92
Query: 221 RCLRRR 238
R RRR
Sbjct: 93 RFPRRR 98
>10_08_1000 +
22130210-22130300,22130412-22130683,22130780-22130915,
22131228-22131361,22131550-22131655,22131829-22131914,
22132304-22132492,22132580-22132738,22133083-22133196,
22133483-22133734
Length = 512
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 727 YSISSCGHCKKQ*EIYQQILMSLTKAT 807
Y +SS G +KQ E+ +LM +TKAT
Sbjct: 325 YLLSSVGPLQKQKEVASHVLMGITKAT 351
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 29.5 bits (63), Expect = 3.4
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Frame = +2
Query: 170 PSPARSSLKISRNKQRPRCLRRRVG-------S*AAGQGSRRPAARPGLRQAGRRHLRDP 328
P PAR+ + Q PR + R+G G+ RR +R + GR R+
Sbjct: 261 PVPARAFETFPHHPQPPRSVHERLGRNKERDDDDRVGRDDRR--SRDNRGKGGRDRSREE 318
Query: 329 RPGAPRSDDRVTRD 370
R G +DDR RD
Sbjct: 319 RNGRDENDDRGGRD 332
>03_05_0848 + 28196438-28196623
Length = 61
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +2
Query: 152 SSPTCRPSPARSSLKISRNKQRPRCLRRRVGS*AAGQGSRRPAARPGLRQAGR 310
+SP+ P+ + ISR K R + R+ AGQG R AAR R GR
Sbjct: 2 ASPSS-PASSNPETHISRRKTPARSHQLRLLQRDAGQGKRHRAARRRYRHRGR 53
>02_05_0876 - 32399066-32399920
Length = 284
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 125 PRCGRCWRSSSPTCRPSPARSSLKISRNKQRPRCLRRRVGS*AAGQGSRRPAA 283
PR G R +P P PA ++ SR+++R R RR+ G+ A PAA
Sbjct: 25 PRAGDAARHPAPNPSPPPAAAAPASSRSRERER-KRRQRGAFADPAAVTAPAA 76
>03_02_0660 + 10244962-10245606
Length = 214
Score = 29.1 bits (62), Expect = 4.5
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Frame = +2
Query: 11 RPPPNGTERWCWNRFWGPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSS 190
+P P ++ N +W +W + R R P + WR+++ A +
Sbjct: 5 KPSPQQHQQQRANEWWSDGETAALIDAWGPPHVARSRGPLPAKDWRAAASAVNARRAAAG 64
Query: 191 LKISRNKQRPRCLRRRVGS*AAGQGSRRPAARP---GLRQAGRRH---LRDPRPGAP 343
+ N+ R +C R RV + + +R A+P G R R L P PG P
Sbjct: 65 RR--HNRTRAQC-RARVQT--LKERYKRELAKPPPSGWRHFSRLQEFLLAGPPPGFP 116
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 29.1 bits (62), Expect = 4.5
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 119 RSPRCG------RCW-RSSSPTCRPSPARSSLKISRNKQRPRCLRRRVGS*AAGQGSRRP 277
R P CG R W R RPSP R S + R+ R R ++G GSRR
Sbjct: 134 RRPGCGGGGDEERDWERHGGAVSRPSPHRGSPQRKRSGSRER---------SSGGGSRRA 184
Query: 278 AARPGLRQAG 307
+ PG R G
Sbjct: 185 SRSPGRRAEG 194
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 59 GPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCR 169
GP++AP C + + A L RC SP W S R
Sbjct: 286 GPSSAPPPCSAASRAWLVRCSSPLSDSEWTRRSILAR 322
>06_01_0855 + 6493239-6494420
Length = 393
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 97 HGNVAEVPVSSLRKMLAEFVTDLPAVACQIVIEDFPKQATAEMLAKARRFMSGRTRLAPP 276
H A P+SSLR++L T P +ED+ A+AR+ + L P
Sbjct: 20 HPTAAISPLSSLRRLLLFSTTAAPVSPEPFAVEDYLVATWGLTGAQARKASKKLSHLRSP 79
Query: 277 SCP 285
S P
Sbjct: 80 SKP 82
>10_06_0145 + 11215895-11216860
Length = 321
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -3
Query: 161 SVTNSASIFRSEETGTS----ATLPWSTNSTCAVPPPGPRICSSTTALCHSEEGGS 6
S + A I ++ T T+ A P STN+T PPP PR+ + C E +
Sbjct: 194 SASVDAKILQATTTTTADTAAAAAPASTNTT---PPPSPRVVKTEPGCCSVSEAST 246
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 47 NRFWGPAAAPRTCCSWTTAT--LPRCRS 124
N +GP P+ CC+W A P C S
Sbjct: 686 NTMFGPEGRPQHCCAWLGAACCFPECAS 713
>07_03_0734 +
21067747-21068569,21069678-21069812,21069967-21070100,
21070182-21070449,21070472-21070709,21070787-21070937,
21071040-21071387
Length = 698
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = -3
Query: 254 PLMNRRAFASISAVACFGKSSMTIWQATAGRSVTNSASIFRSEETGTSATLPWSTNSTCA 75
P+M A + + F ++ T+ AT+G + NS+ F + E A P +
Sbjct: 135 PMMLMNAQNASATAEVFDAAAATLLNATSGYAAANSSRRFATGEEAFDAADPTIYGLSQC 194
Query: 74 VPPPGPRICSS 42
P P C S
Sbjct: 195 TPDMSPDDCRS 205
>07_03_0015 - 12447947-12448393
Length = 148
Score = 28.3 bits (60), Expect = 7.9
Identities = 32/93 (34%), Positives = 34/93 (36%)
Frame = +2
Query: 35 RWCWNRFWGPAAAPRTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSLKISRNKQ 214
RWC G A PR ATLP PRC R W S PT R + +K
Sbjct: 25 RWCLG---GGEARPR-------ATLP----PRCRRWWWRSEPTSRGGRRGGRRDVGDDKD 70
Query: 215 RPRCLRRRVGS*AAGQGSRRPAARPGLRQAGRR 313
G AG G R R G R GRR
Sbjct: 71 ---------GEAGAGDGGLRTKPRAG-RGGGRR 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,543,881
Number of Sequences: 37544
Number of extensions: 495994
Number of successful extensions: 1864
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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