Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120439.Seq
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   8.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   8.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = -2

Query: 144 QHLPQRGDRHLGNVAV-VHEQHVRGAAAGPQNLFQHHRS 31
           QH P +   H G+     H  H  G   GP +   HH++
Sbjct: 320 QHHPSQYHPHRGSSPHHQHGNHTMGPTMGPPHHHHHHQT 358


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = -2

Query: 258 PAAHEPTRLRKHLGRCLFREIFNDDLAGDGRQVGDELRQHLPQRGDRHLGNVAVVHEQHV 79
           P  H P R  +   R +       DL     Q+   +++     GD  LG + +VHE+  
Sbjct: 78  PETHHPIRHGRRQSRSM-------DLNAHREQMSWPVKKEAVVEGDLVLGGLMMVHERQD 130

Query: 78  RGAAAGP 58
           R    GP
Sbjct: 131 R-LTCGP 136


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 299 QAGRRHLRDPRPGAPRSDDRVTRD*MRCCL 388
           Q+GR  + D +     SD R  R  ++C L
Sbjct: 27  QSGRSRVSDEQLNMALSDQRYLRRQLKCAL 56


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 299 QAGRRHLRDPRPGAPRSDDRVTRD*MRCCL 388
           Q+GR  + D +     SD R  R  ++C L
Sbjct: 27  QSGRSRVSDEQLNMALSDQRYLRRQLKCAL 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,627
Number of Sequences: 438
Number of extensions: 4840
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)