Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120439.Seq
(829 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.10
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.10
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 33 0.23
At5g01280.1 68418.m00037 expressed protein 30 1.6
At3g45830.1 68416.m04960 expressed protein 29 2.8
At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2... 29 2.8
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 6.6
At3g15250.1 68416.m01926 expressed protein ; expression supporte... 28 6.6
At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly ide... 28 6.6
At5g51800.1 68418.m06423 expressed protein 28 8.7
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +2
Query: 89 SWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSLKISRNKQRPRCLRRRVGS*AAGQGS 268
S +++ PR GR RSSS + PSP R KISR++ R LR + S + S
Sbjct: 337 SRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSS 396
Query: 269 RRPAARP 289
P P
Sbjct: 397 SPPPPPP 403
Score = 29.1 bits (62), Expect = 3.8
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Frame = +2
Query: 11 RPPPNGTERWCWNRFWGPAAAPRTCCSWTTATLP--RCRSP--RCGRCWRSSSPTCRPSP 178
R PP G+ R R G R+ + P R RSP R RS SP RP
Sbjct: 281 RSPPRGSPR----RIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGR 336
Query: 179 ARSSLKISRNKQRPRCLRRRVGS*AAGQGSRRPAARPGLRQAGRRHLRDPRPGAPRS 349
+RSS R + P R R S ++ RR + ++ +R LR R + S
Sbjct: 337 SRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSS 393
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +2
Query: 89 SWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSLKISRNKQRPRCLRRRVGS*AAGQGS 268
S +++ PR GR RSSS + PSP R KISR++ R LR + S + S
Sbjct: 344 SRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSSSSS 403
Query: 269 RRPAARP 289
P P
Sbjct: 404 SPPPPPP 410
Score = 29.1 bits (62), Expect = 3.8
Identities = 35/117 (29%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Frame = +2
Query: 11 RPPPNGTERWCWNRFWGPAAAPRTCCSWTTATLP--RCRSP--RCGRCWRSSSPTCRPSP 178
R PP G+ R R G R+ + P R RSP R RS SP RP
Sbjct: 288 RSPPRGSPR----RIRGSPVRRRSPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGR 343
Query: 179 ARSSLKISRNKQRPRCLRRRVGS*AAGQGSRRPAARPGLRQAGRRHLRDPRPGAPRS 349
+RSS R + P R R S ++ RR + ++ +R LR R + S
Sbjct: 344 SRSSSISPRKGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPKRPLRGKRSSSNSS 400
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1)
(p125Nap1) (Membrane-associated protein HEM-2)
(Swiss-Prot:P55161) [Rattus norvegicus]
Length = 1339
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 NGTERWCWNRFWGPAAAPRTCCSW--TTATLPRCRS 124
N W N +GP P+ CC+W ++ P C S
Sbjct: 597 NAAYNWSRNTMFGPEGRPQHCCAWLSVASSFPECAS 632
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +2
Query: 77 RTCCSWTTATLPRCRSPRCGRCWRSSSPTCRPSPARSSLKISRNKQRPRCL--RRRVGS* 250
R + T ATL + R W S + +R +L +R RP ++ GS
Sbjct: 117 RATSTTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAAR-ATRPTTSTDQQTTGSA 175
Query: 251 AAGQGSRRPAARPGLRQAGRRHLRDPRPGAPRSDDRVTR 367
+ + + RP + P + R RP P V R
Sbjct: 176 TSTRSNNRPMSAPNSKPGSRSSTPTRRPSTPNGSSTVLR 214
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 257 GQGSRRPAARPGLRQAGRRHLRDPRPGAPRSD 352
G GSRR +PG + G++H + R G P S+
Sbjct: 344 GMGSRRDREKPGYSRPGKKH-KSSRDGEPISE 374
>At3g19580.1 68416.m02483 zinc finger (C2H2 type) protein 2 (AZF2)
identical to Cys2/His2-type zinc finger protein 2
[Arabidopsis thaliana] gi|6009885|dbj|BAA85107
Length = 273
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 4 ALPPSSEWHRAVVLEQILGPGGGTAHVLFVDHGNVAEVPVSSLR 135
ALP S H +V E+IL P G +L DH V + SL+
Sbjct: 229 ALPELSLHHNPIVDEEILSPLTGKKPLLLTDHDQVIKKEDLSLK 272
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 6.6
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 149 SSSPTCRPSPARS-SLKISRNKQRPRCLRRRVGS*AAGQGSRRPAARPGLRQAGRRHLRD 325
S SP+ R ARS S SR++ RPR LR R S R R R GR + +
Sbjct: 11 SRSPSPRKERARSRSRSRSRSRSRPR-LRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVEN 69
Query: 326 P 328
P
Sbjct: 70 P 70
>At3g15250.1 68416.m01926 expressed protein ; expression supported
by MPSS
Length = 217
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 537 SINSSMFLKFN*VYSNQITYIFFKFSTLSGSPVNLQKVSLKKRPFIPRC 683
S NSS N ++Q + S + SP+N + + LK +P I RC
Sbjct: 77 STNSSSSFGSNNSSTSQSPRTSYSTSNKNNSPINQEPLDLKLKPPISRC 125
>At3g02050.1 68416.m00168 potassium transporter (KUP3) nearly
identical to potassium transporter KUP3p [Arabidopsis
thaliana] gi|6742169|gb|AAF19432; similar to tiny root
hair 1 protein [Arabidopsis thaliana]
gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family
member, PMID:11500563
Length = 789
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +1
Query: 16 SSEWHRAVVLEQILGPGGGTAHVLFVDHGNVAEVPVSSLRKMLAEFVTDLPAVACQIVIE 195
S + H V L+ +LG G V G V + + + + FVT+LPA ++V+
Sbjct: 505 SFDLHNKVSLKWLLGLGPSLGIVRVPGIGLVYSELATGVPAIFSHFVTNLPAFH-KVVVF 563
Query: 196 DFPKQATAEMLAKARRFMSGR 258
K ++ RF+ GR
Sbjct: 564 VCVKSVPVPHVSPEERFLIGR 584
>At5g51800.1 68418.m06423 expressed protein
Length = 972
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 182 WQATAGRSVTNSASIFRSEETGTSATLPWSTNSTCAVPPPGPRICSS 42
W+A S +AS S T ++A + S+ T PPG +S
Sbjct: 80 WKALPSPSTVPTASTISSSPTPSTAVVTASSTETAGSSPPGQEATNS 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,194,292
Number of Sequences: 28952
Number of extensions: 353802
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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