Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120438.Seq
         (792 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.30 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   3.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   3.7  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 121 TPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERS 240
           TP  NSP  P  +   +N K P    L T  ++++  +R+
Sbjct: 436 TPTENSPTKPYYKLKTANNKRPPSTELGTNIYTSSKRQRT 475


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 34  TVTMNRFFRENNIFDAPKTGGKGRVKSLPT 123
           TV   RF   NNI D+ +   + R +++PT
Sbjct: 185 TVLKARFEAINNIIDSIRQNSQTRNQAVPT 214


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 34  TVTMNRFFRENNIFDAPKTGGKGRVKSLPT 123
           TV   RF   NNI D+ +   + R +++PT
Sbjct: 185 TVLKARFEAINNIIDSIRQNSQTRNQAVPT 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,507
Number of Sequences: 336
Number of extensions: 4503
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)