Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120438.Seq
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0235 + 32539025-32539886,32540330-32540473,32540595-325407... 32 0.45
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 31 1.4
06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312 30 1.8
06_03_1150 + 28022633-28023374,28023501-28023565 30 1.8
05_04_0163 + 18652306-18652839,18653785-18653853,18655139-186552... 30 1.8
12_02_1265 - 27435096-27437675 30 2.4
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 30 2.4
11_04_0211 - 14913699-14914160 29 3.2
06_03_0905 + 25843547-25844314 29 3.2
02_01_0791 - 5930553-5930802,5931042-5932351 29 3.2
11_01_0066 - 536281-537196,537397-537452 29 4.2
08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991... 29 4.2
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 29 4.2
11_06_0610 - 25449085-25453284 29 5.6
07_03_1017 - 23318187-23318348,23318747-23318857,23319859-233199... 29 5.6
06_03_0661 + 23225514-23227073 29 5.6
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410... 29 5.6
09_04_0430 + 17502387-17503505 28 9.8
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 9.8
07_01_0565 + 4188387-4190570 28 9.8
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 28 9.8
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 28 9.8
>03_06_0235 +
32539025-32539886,32540330-32540473,32540595-32540747,
32540871-32540986,32541254-32541421,32541534-32541758,
32541884-32542015
Length = 599
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPK 168
AP GG+GR+ + P P +++PL+ +PP+
Sbjct: 40 APDGGGQGRLPAPPPPTSDAPLAVQNKPPE 69
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = -3
Query: 145 TAASWRQALAKI*HGPCHRSLARQKCYSLEKNGSL*LLVSTQKS 14
+A+ WR LA++ P S +++ S+++ GS +LVST+K+
Sbjct: 247 SASWWRPVLARMVGRPVSVSGLKKRLVSIDRKGSYTMLVSTRKT 290
>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
Length = 270
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSSM* 258
AP + G G + P P +SP+SP Q ++ P S P PL +S +
Sbjct: 120 APPSSGSG-FPAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADY 178
Query: 259 VKNQSSTEKMDILCR--PSLVTNWKVC 333
+ N S+ C SLV+ +C
Sbjct: 179 LTNSSAQTPPGTCCEGFKSLVSTAPIC 205
>06_03_1150 + 28022633-28023374,28023501-28023565
Length = 268
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSSM* 258
AP + G G + P P +SP+SP Q ++ P S P PL +S +
Sbjct: 120 APPSSGSG-FPAFPFPFPSSPVSPPSQASPASPAAPAPPSPPQPKECLTPLLSMMSCADY 178
Query: 259 VKNQSSTEKMDILCR--PSLVTNWKVC 333
+ N S+ C SLV+ +C
Sbjct: 179 LTNSSAQTPPGTCCEGFKSLVSTAPIC 205
>05_04_0163 +
18652306-18652839,18653785-18653853,18655139-18655270,
18655424-18655477,18655570-18655614,18656166-18656305,
18657107-18657232,18657325-18657361
Length = 378
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 273 VNRKDGYFVPPEFGNKLESLPA 338
VNR++ FV + G KLESLPA
Sbjct: 95 VNRREALFVLAQLGRKLESLPA 116
>12_02_1265 - 27435096-27437675
Length = 859
Score = 29.9 bits (64), Expect = 2.4
Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Frame = +1
Query: 67 NIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP-----L 231
N+ GG + + T + PLS QP SNIK + SLP NP L
Sbjct: 146 NLKSTSNNGGTNQASQMATSYSYQPLSDA-QP--SNIKSHNQHSLPEAKMPYNPSVQNNL 202
Query: 232 ERSISSSM*VK-NQS-STEKMDILCRPSLVTNWKVCPRTATNWISN 363
+ +S S K NQS S + PS + N + + TN+ SN
Sbjct: 203 GKGVSRSGYAKSNQSFSGPPAMVANSPSQIKNQRHPGQRHTNYHSN 248
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 29.9 bits (64), Expect = 2.4
Identities = 25/104 (24%), Positives = 46/104 (44%)
Frame = -3
Query: 691 WNVVI*IAFLTAYVYAVRIVQRLFDVNHNIQKPCARVVFESIIASGASRIAHVLLRSLFV 512
WN I +A + A+ + L P +RVV + +IA LR FV
Sbjct: 211 WNFAIALAVGRSVTDAIYFLHMLLQFRLAYVAPESRVVGTGDLVDEPMKIAMRYLRGFFV 270
Query: 511 FTELLANLPVMRISLLFI*PIM*LVENFSVAFMMLRSKSLIKCI 380
+L LP+ ++ +L + P + + + A +LR+ L++ +
Sbjct: 271 L-DLFVVLPLPQVMILLVIPKYVGLSSANYAKNLLRATVLLQYV 313
>11_04_0211 - 14913699-14914160
Length = 153
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 494 CKQFCKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDDSDRIDIC 658
C+QF +KT H SD R Y DN + W+ + +H P D + D+C
Sbjct: 67 CEQFFCGQKT---HDSD-RVGLATYHLADNAQEWYFHYEIHKGPPTWDEFK-DLC 116
>06_03_0905 + 25843547-25844314
Length = 255
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
P P+ P PV PPK + P ++ PT + P+
Sbjct: 76 PPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPV 113
>02_01_0791 - 5930553-5930802,5931042-5932351
Length = 519
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC 145
VF + FLTR RPV V C + P RRC
Sbjct: 89 VFLSTVRFLTRPRPV-YLVDFACYKPPPERRC 119
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRT 213
P +A P SP PP S PP PT T
Sbjct: 217 PPSIATPPPSPASPPPPSTATPPPPSPTPTTT 248
>08_02_1227 -
25398063-25398302,25398629-25398790,25399019-25399150,
25399909-25399961,25400465-25400942
Length = 354
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 130 ANSPLSPVRQPPKSNIKPPTRISLP 204
A SPL P PP SN +PP S+P
Sbjct: 328 AGSPLHPGIAPPSSNSQPPFLSSMP 352
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPT--RTFSANPLERSISS 249
P PV ++PV P K I PP RI+ PT +FS L++ SS
Sbjct: 337 PFPVEKVTVNPVVPPEKRYISPP-RINKPTSATSFSVASLQQYTSS 381
Score = 28.3 bits (60), Expect = 7.4
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSSM*VKNQSSTEKM 288
PTP +P PP S+ PP+R P+ + +ISSS K SST K+
Sbjct: 170 PTPSPTNPNLEPSPPPPSSSAPPSR--TPSNSSDGPTTRDNISSSK--KQNSSTLKI 222
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSIS 246
VKSLP P +P+S + PP ++ PP +SLP + P +S
Sbjct: 1261 VKSLPPP---APVS-LPPPPVKSLPPPAPVSLPPPVVKSLPPPAPVS 1303
>07_03_1017 -
23318187-23318348,23318747-23318857,23319859-23319964,
23320113-23320153
Length = 139
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = -3
Query: 673 IAFLTAYVYAVRIVQRLFDVNHNIQKPCARVVFESIIASGASRIAHVLLRSLFVF 509
+ +T + + +++ V HN+++ + +SII G++ + HV+L +LF F
Sbjct: 78 LVVMTCFPLQMTLIKAQAGVKHNMRR-----MNKSIIQQGSNHVVHVVLFALFCF 127
>06_03_0661 + 23225514-23227073
Length = 519
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 199
VF + FLTR RPV + C + P R+C F+ +LT + A+L
Sbjct: 93 VFLSTLYFLTRPRPV-YLLDFACYKPDPQRKCTRETFMRCSSLTGSFTDANL 143
>05_05_0079 +
22239238-22239395,22240837-22240877,22240955-22241033,
22241570-22241656,22241749-22241837,22241933-22242004,
22242094-22242186,22242339-22242427
Length = 235
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 600 CMLWFTSKSRWTILTA*TYAVKNAIYITTFQRPRTK 707
CMLW TS S T+L A A+ + +F+ P K
Sbjct: 154 CMLWLTSCSLLTVLWALLIAIFATLLHASFRTPNLK 189
>09_04_0430 + 17502387-17503505
Length = 372
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 103 RVKSLPTPVANSPLS-PVRQPPKSNIKPPTRIS-LPTRTFSANPLE 234
R LPTP P S P R P+S PP R++ P T +A P+E
Sbjct: 178 RAAPLPTPPRAPPQSTPPRAAPQST--PPQRVAPQPPATAAAPPIE 221
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 121 TPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL 231
T N S VR+P S+I+ P R + +R+ S +PL
Sbjct: 12 TQTTNFVWSVVRRPAASSIRSPVRPVISSRSRSTSPL 48
>07_01_0565 + 4188387-4190570
Length = 727
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = -2
Query: 374 ITLLFEIQFVAVRGQTFQFVTKLGRHKISIFSVDDWFFTYMLLLMLRSNGLAEKVRVGKE 195
+T ++ +A G T + + +GR + + D + +T ++ M+R + +RV +E
Sbjct: 266 VTFAIMVRALARAGMTDKLLEMIGRMRAEVCRPDVFVYTALVKTMVRWGHMEGCIRVWEE 325
Query: 194 MR 189
+R
Sbjct: 326 IR 327
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPL---ERSISSSM*VKNQSST 279
P PV++ P P PP + KP LPT + P E SS V + SST
Sbjct: 15 PNPVSDDPPPP---PPVTETKPEPEPPLPTTSIDPTPSGDEESGDDSSSSVSSASST 68
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 97 KGRVK-SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSA 222
KG V ++PT N+P +PV P + N PP ++ P T A
Sbjct: 99 KGAVSPAVPTRPQNAP-TPVTPPKEYNAPPPVELTPPAPTHVA 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,462,431
Number of Sequences: 37544
Number of extensions: 463878
Number of successful extensions: 1532
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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