Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120438.Seq
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 32 0.46
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57) 31 0.81
SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 31 1.4
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24) 30 2.5
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 30 2.5
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 29 3.3
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 29 3.3
SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19) 29 4.3
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032) 29 5.7
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 29 5.7
SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07) 29 5.7
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 7.5
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_17494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 28 10.0
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 28 10.0
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 485 GQICKQFCKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDD 637
GQ C Q C +K C C Y F D TR L+V + + DD
Sbjct: 53 GQSCHQQCFWKWIHTHRTERITCPHCRYVFPDTTRGVVLWVDSNFKPMYDD 103
>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
Length = 818
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 97 KGRVKSLPTPVANSPLSPVRQP----PKSNIKPPTRISLPTRTFSANPLERSISSSM*VK 264
+ R SLP A+SP +P P P SN PP+ +SL R + + +
Sbjct: 676 RARSLSLPCTAASSPSTPASSPSPTPPLSNSLPPSTLSLMLRKKRTSNAFDINNIVIPYS 735
Query: 265 NQSSTEKMDILCRPSLVTNWKV 330
SST + + L NW+V
Sbjct: 736 MASSTRVEKLQYKEILTPNWRV 757
>SB_41318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 485 GQICKQFCKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDD 637
GQ+C Q C +K D C C + F TR L++ + +D
Sbjct: 53 GQVCHQQCFWKWIHFHRTEDITCPHCRHAFPSTTRGVVLWIDSNFNPKYED 103
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 30.7 bits (66), Expect = 1.4
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +1
Query: 40 TMNRFFRENNIFDAPKTGGKG-RVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTF 216
T R + ++ +PKT K R+KSL T SP R PK++ K + S P +
Sbjct: 88 TSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEIGPRTSPKTSSKTSPKTS-PKSSP 146
Query: 217 SANPLERSISSSM*VKNQSSTEKMDILCRPSLVTNWKVCPRTA 345
+P S +S + S R SL + K P+T+
Sbjct: 147 KTSPKTSSKTSLKTSQKTSLNASRKTSRRTSLKRSLKTSPKTS 189
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSS 252
LP P + PL P + PP S I P+++S + +P +SS+
Sbjct: 1354 LPPPHSRLPLPPPKLPPPSRIPLPSKLS-TNKDIKFHPYHNVVSST 1398
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSN--------IKPPTRISLPTR 210
LP P+ PL P+R PP + + PP+RI LP++
Sbjct: 1340 LPLPLPRLPLPPLRLPPPHSRLPLPPPKLPPPSRIPLPSK 1379
>SB_738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 106 VKSLPT-PVANSPLSPVRQPPKSNI-KPPTR--ISLPTRTFSANPLERSISS 249
+ S PT P+ + P SP+ PP + I PPT +S PT + + P +S+
Sbjct: 16 IMSPPTNPIMSPPTSPIMSPPTNPIMSPPTNPIMSPPTNSIMSAPTNSIMSA 67
>SB_23893| Best HMM Match : rve (HMM E-Value=3.1e-24)
Length = 553
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +1
Query: 16 IFEC*PTVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSP----LSPVRQPPKSNIKP 183
+ C P V+ E + P+ K +PT SP +PVR+ P+ KP
Sbjct: 488 VLPCTPVVSSKPILPEPEVTPLPEVSPKSSETVVPTCTTESPPDVASTPVRRYPRRTPKP 547
Query: 184 PTRISL 201
R+ L
Sbjct: 548 VVRLDL 553
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +2
Query: 518 KTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDDSDRIDICCQKC 670
K E + S+CTTCN ++ F Y+ K I C+KC
Sbjct: 208 KKAEPGTTHSKCTTCNGTGQETVNTGFFYMKSTCRKCAGQGYIISTPCRKC 258
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 219 GQSVGAQHQQQHVSKKPVVNRKDGYFVPPEFGNKLESLPAYSD-KLDFKQERDLRMHFMS 395
GQS+ A +V+ KP V + P F K + +PA + K + +QE ++ H +
Sbjct: 47 GQSLAADFNSLNVNAKPFVPNVNAPSFVPSFLTKPDPVPAQEEAKENVQQEIEVE-HKQN 105
Query: 396 DLERNIMKATL 428
D E +++ L
Sbjct: 106 DQEEEVVEDAL 116
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 228
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 230 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 280
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 APKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTR-ISLPTRTFSANP 228
AP G R P P N P P+R P PP + P + S+NP
Sbjct: 142 APPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEPPPPKNAPPPPKRGSSNP 192
>SB_51079| Best HMM Match : zf-C3HC4 (HMM E-Value=0.19)
Length = 337
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 485 GQICKQFCKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDD 637
GQ+C Q C +K C C + F +T+ L+V + + DD
Sbjct: 52 GQVCHQQCFWKWAHYHRTEAVTCPHCRHVFPSSTKEIVLWVDSNFKPKYDD 102
>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/88 (26%), Positives = 44/88 (50%)
Frame = +1
Query: 58 RENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLER 237
++ + +PKTG + + +LP V + SPV++P KS +KP +++ +T P
Sbjct: 533 KKETVHWSPKTGVEEK-NTLP--VVPTWKSPVKKPTKSTVKPLPKLA---KTTFKPPSTT 586
Query: 238 SISSSM*VKNQSSTEKMDILCRPSLVTN 321
I + +K + + + PSLV +
Sbjct: 587 KIEGASELKPRKMPKLVKPFVTPSLVVS 614
>SB_39878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1052
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 707 IYPSINLVDLSYLARERFLPIHFP 778
++PSI +V+L LA ER+L + FP
Sbjct: 599 LFPSITIVNLFALAVERYLGVFFP 622
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +2
Query: 431 IFHQLHYGLYKQ*RYAHDGQICKQFCKYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVV 610
++H Y Y Y H + +Y +++ H+ T RF ++ + +Y +
Sbjct: 342 MYHMTSYAQYNSSSYYHLMYHMTSYAQYNSSSDYHLMYH--MTSYARFNSSSYYYLMYHM 399
Query: 611 VHIEKPLDDSDRIDICC----QKCYLYHNVPKTSYEIYPSINLVDLSYLARE 754
+ SD + YL +++P +Y +Y I + ++ L ++
Sbjct: 400 TSYAQYNSSSDYYLMSYVPHNANYYLMYHIPHNAYVLYTPIRMFTITLLVKQ 451
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPPKSNI---KPPTRISLPTRTFSANPLER 237
+T + RV++ P A P P PP SN+ PP + P + P ++
Sbjct: 64 ETAARSRVETTDGPAAVIPPPPPPPPPASNVPAPPPPPPVMPPQKVIMRKPTKK 117
>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
Length = 521
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +1
Query: 79 APKTGGKG-RVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT------RTFSANPLER 237
+PKT K R+KSL T SP R PK++ K + SL T T L+R
Sbjct: 349 SPKTSPKTMRMKSLKTSPKTSPEISPRTSPKTSSKTSPKTSLKTSLNTSLNTSQKTSLKR 408
Query: 238 SISSSM*VKNQSSTEKMDI 294
S++++ S +K+++
Sbjct: 409 SLNTNK--PGDKSKDKLEV 425
>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 858
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 76 DAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPT 189
D +T G+ V P PL+P PPK+ + P+
Sbjct: 300 DPGQTQGEEAVPGTPLQKPGGPLAPAESPPKTGTEEPS 337
>SB_24355| Best HMM Match : SAM_2 (HMM E-Value=3e-07)
Length = 352
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPP 186
P+T + KS P P+ +SPV++P K PP
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPP 246
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPP---KSNIKPPTRISLPTRTFSANPLE 234
P+P + P P RQPP S PP R P T A+P E
Sbjct: 1062 PSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTE 1103
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPP 186
P+T + KS P P+ +SPV++P K PP
Sbjct: 213 PRTNSSNKKKSAP-PLPKHVVSPVKRPNKVKAPPP 246
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRI-SLPTRTFSANP 228
P P PL P+R+PP PP + S PT + P
Sbjct: 36 PIPHGPRPLPPLREPPTPAPTPPPALPSTPTLPLAPRP 73
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKS 171
SLP P+A+ L P QPPK+
Sbjct: 1496 SLPQPIASKQLEPPPQPPKA 1515
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 133 NSPLSPVRQPPKSNIKPPTRISLPTRTFSA 222
++PLSP PPKS ++ P + + SA
Sbjct: 2161 SNPLSPFHDPPKSPVEEPMQFEQLAKVLSA 2190
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 115 LPTPVANSPLSPVRQPPKSNIKPPTRISLP 204
LPTP+A+S P+ PP PPT I +P
Sbjct: 689 LPTPIASSEPLPLPPPP-----PPTGIDIP 713
>SB_17494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +3
Query: 564 IIDSKTTRAHGFCMLWFT--SKSRWTILTA*TY--AVKNAIYITTFQRPRTKYILPSIWS 731
+I + GF W S + T + Y VK Y T F RTK +L +IW
Sbjct: 118 VISDTYCQFQGFTCTWLACVSLATLTFMAVNRYYRIVKPDRYRTVFTAKRTKLLLSAIWG 177
Query: 732 TSAI*P 749
S + P
Sbjct: 178 FSLLSP 183
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVAN--SPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSS 252
+TG + P PV N SP P+R+ + P R PTRT S S +++
Sbjct: 702 RTGSVNKPSRAPPPVPNHPSPAVPLRREGDTKSFAPQRPPPPTRTPSGKDRPHSTTAT 759
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 620 EKPLDDSDRIDICCQKCYLYHNVPKTSYE 706
E+ + D+D D+ C+ C +Y N P E
Sbjct: 307 EQAVGDADENDLLCKTCNMYFNSPHNKRE 335
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,962,522
Number of Sequences: 59808
Number of extensions: 551567
Number of successful extensions: 1807
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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