Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120438.Seq
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.35 
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.35 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.35 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   1.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         24   1.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.7  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
 Frame = +1

Query: 37  VTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIK---PPTRISLPT 207
           + +N  FR       P+   K  +K LPT      +  +R+P K+ ++       ++LPT
Sbjct: 316 IIINWNFRGPRTHRMPQLIRKIFLKYLPT------ILMMRRPKKTRLRWMMEIPNVTLPT 369

Query: 208 RTFSANPLE--RSISSSM*VKNQSSTEKMDILCRPSLVTNWKVCPRTATN 351
            T+S +P E  + + +S+  K++    ++  L  P+   N KV   T+++
Sbjct: 370 STYSGSPTELPKHLPTSL-TKSKMEVMELSDLHHPNCKINRKVHHTTSSS 418


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 449 YGLY-KQ*RYAHDGQICKQFCKYKKTTEQHMSD 544
           Y L+ K  R+A    ICK FCK +  T +  SD
Sbjct: 62  YALFSKDFRFAFKSIICKCFCKRRTNTLRRGSD 94


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 449 YGLY-KQ*RYAHDGQICKQFCKYKKTTEQHMSD 544
           Y L+ K  R+A    ICK FCK +  T +  SD
Sbjct: 510 YALFSKDFRFAFKSIICKCFCKRRTNTLRRGSD 542


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -1

Query: 84  WRVKNVILSKKTVHCNCWLALKNQHNTV 1
           W  KN +        +CWL +   HN +
Sbjct: 105 WNTKNCVNPYDRDSLSCWLQMTKHHNFI 132


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 SLPTPVANSPLSPVRQPPKSNIKPPTRI 195
           S+P  V + P+  +RQ  + NI+P T +
Sbjct: 20  SVPKVVYDGPIYELRQIEEENIEPDTEL 47


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 121 TPVANSPLSPVRQPPKSNIKPPTRISL 201
           TP +++P+SPV  P   ++  P R +L
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPVRETL 462


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 219  GQSVGAQHQQQHVSKKPVVNRKD 287
            G+   +Q QQQ  S +PV+  +D
Sbjct: 1572 GEQANSQQQQQQQSGEPVIGMED 1594


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 RVKSLPTPVANSPLSPVRQPPKSNIKPPTRIS 198
           +V    +P+   P++PV++      +PP R+S
Sbjct: 11  KVDRSTSPLPRKPVNPVQELKALFAEPPVRVS 42


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 683 NVPKTSYEIYPSINLVDLSYLARERFLPIH 772
           N P       PS +L+DLS     R LPI+
Sbjct: 41  NSPDHYERFSPSTHLMDLSSPPEHRDLPIY 70


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = +1

Query: 511 IQKDYGAAHERFAMHH 558
           ++KD+G   +++ +HH
Sbjct: 10  LKKDFGTYFQQYCLHH 25


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 680 DIDSIFDSICLCGQNRPTAFRCEPQHTKTMRACCL*IYNC 561
           DI++IF    +   N+   ++ + ++ K  R+  L  YNC
Sbjct: 657 DIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 482 DGQICKQFCKYKKTTEQHMSDSRCTTCNYRFKD 580
           DGQI      Y+   ++   DS+C+ C  RF++
Sbjct: 255 DGQI---MVDYEDEFDE-FGDSKCSLCQRRFEE 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,033
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)