Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120438.Seq
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56890.1 68418.m07099 protein kinase family protein contains ... 33 0.16
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 33 0.29
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.66
At1g20070.1 68414.m02512 expressed protein 31 0.66
At5g43100.1 68418.m05261 aspartyl protease family protein low si... 30 1.5
At5g46780.2 68418.m05763 VQ motif-containing protein contains PF... 30 2.0
At5g46780.1 68418.m05762 VQ motif-containing protein contains PF... 30 2.0
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa... 30 2.0
At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative si... 30 2.0
At4g25220.1 68417.m03629 transporter, putative similar to glycer... 29 3.5
At2g24570.1 68415.m02934 WRKY family transcription factor identi... 29 3.5
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t... 29 4.7
At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identic... 29 4.7
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr... 29 4.7
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 4.7
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 4.7
At4g35240.1 68417.m05009 expressed protein contains Pfam domains... 28 6.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 6.2
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase... 28 6.2
At1g49480.1 68414.m05546 transcriptional factor B3 family protei... 28 6.2
At1g09060.2 68414.m01011 transcription factor jumonji (jmjC) dom... 28 6.2
At1g09060.1 68414.m01010 transcription factor jumonji (jmjC) dom... 28 6.2
At5g45120.1 68418.m05539 aspartyl protease family protein contai... 28 8.2
At3g50380.1 68416.m05511 expressed protein 28 8.2
At3g20850.1 68416.m02636 proline-rich family protein contains pr... 28 8.2
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 33.5 bits (73), Expect = 0.16
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 76 DAPKTGG-KGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSAN----PLERS 240
DAPK GRV P PV+ SP+S + P + PPT ++P R S N P+E+S
Sbjct: 138 DAPKEPPFSGRVT--PAPVS-SPVSDIPPIPSVALPPPTPSNVPPRNASNNHKPPPIEKS 194
Query: 241 IS 246
I+
Sbjct: 195 IA 196
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 32.7 bits (71), Expect = 0.29
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 58 RENNIFDAPK-TGGKGRVKSLPTPVANSPLS--PVRQPPKSNIKPPTRISLPTRTFSANP 228
++ N+ P T K + ++PTP + +PLS P R+P S+ PP S P R S N
Sbjct: 28 KKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSHSSKAPP---SHPPRKSSGNR 84
Query: 229 LERSISSSM*VKNQSSTEKMD 291
L + V ++SST D
Sbjct: 85 LRHRAT----VDSKSSTTSGD 101
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = +1
Query: 67 NIFDAPKTGGKGRVKSLPTPV------ANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
N+ A + SLPTP A P SP +PP + KPPT + P + + P
Sbjct: 17 NVVFAASNEESNALVSLPTPTLPSPSPATKPPSPALKPPTPSYKPPTLPTTPIKPPTTKP 76
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 124 PVANSPLSPVRQPPKSNIKPPTRISLPTR 210
P N P +PV+ P +KPPT + TR
Sbjct: 185 PTYNPPTTPVKPPTAPPVKPPTPPPVRTR 213
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +1
Query: 106 VKSLPTPVANSP--LSPVRQPPKSNIKPPTR---ISLPTRTFSANP 228
VK TP SP P +PP S +KPPT + PT T P
Sbjct: 139 VKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPPTTTPPVQP 184
>At1g20070.1 68414.m02512 expressed protein
Length = 193
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 112 SLP-TPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSSM*VKNQSSTEKM 288
+LP P ++ SP PP S +PP + LP S PL+R SS V N SS ++
Sbjct: 40 ALPLNPTSSWGSSPAYPPPHSYSQPPL-LPLPRVNSSTVPLQRVNSSRPRVNNNSSLNRV 98
>At5g43100.1 68418.m05261 aspartyl protease family protein low
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 631
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 40 TMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKP-PTRISLPT 207
T+ + REN+ KT + L P + +P SP+ Q SNI P P PT
Sbjct: 399 TLVTYDRENDKLGFLKTNCSDIWRRLAAPESPAPTSPISQNKSSNISPSPATSESPT 455
>At5g46780.2 68418.m05763 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVA---NSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSS 252
PK VK P P+ + P P PP ++ + P FS+NP E IS+
Sbjct: 80 PKPPNSRLVKVRPAPLTQLNHPPPPPPPPPPVQSVPIASEPVQPVNQFSSNPAESPISAY 139
Query: 253 M 255
M
Sbjct: 140 M 140
>At5g46780.1 68418.m05762 VQ motif-containing protein contains
PF05678: VQ motif
Length = 237
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +1
Query: 82 PKTGGKGRVKSLPTPVA---NSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSISSS 252
PK VK P P+ + P P PP ++ + P FS+NP E IS+
Sbjct: 80 PKPPNSRLVKVRPAPLTQLNHPPPPPPPPPPVQSVPIASEPVQPVNQFSSNPAESPISAY 139
Query: 253 M 255
M
Sbjct: 140 M 140
>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 257
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +2
Query: 509 KYKKTTEQHMSDSRCTTCNYRFKDNTRAWFLYVVVHIEKPLDDSDRIDICCQKC 670
K ++ EQ + + CN N + W L + + DD R CC KC
Sbjct: 131 KQREMWEQRIKEESIPVCNRFHCPNPKCWALMSKTELTESTDDGVR--RCCSKC 182
>At2g26640.1 68415.m03196 beta-ketoacyl-CoA synthase, putative
similar to beta-ketoacyl-CoA synthase [Simmondsia
chinensis][GI:1045614]
Length = 509
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 50 VFFERITFLTRQRPVARAVSNLCQRLSPTRRC--RLFVSRQNLTSNHLRASL 199
VF I F+TR RPV V+ C + +R+C ++F+ R LT + +L
Sbjct: 86 VFLMTIYFMTRPRPV-YLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENL 136
>At4g25220.1 68417.m03629 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 504
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 530 AP*SFCIYRTACKFARHAHIFTVYITHNVIGGKF 429
AP +FC++ T + Y++HN+IGG++
Sbjct: 284 APFAFCLFFTKLVSYTFLYWLPFYVSHNMIGGEY 317
>At2g24570.1 68415.m02934 WRKY family transcription factor identical
to WRKY transcription factor 17 GI:15991743 from
[Arabidopsis thaliana]
Length = 321
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 148 PVRQPPKSNIKPPTRISLPTRTFSANP 228
PV PP S++ PP +++ P T + P
Sbjct: 76 PVHSPPSSSVPPPVKVTTPAPTQISAP 102
>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
contains Pfam profile PF02847: MA3 domain
Length = 263
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 94 GKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
G + K +P+P + P QP + PPT SL T
Sbjct: 64 GSQQPKPVPSPTRQTVEKPKPQPQPQEVAPPTTTSLNT 101
>At4g09030.1 68417.m01490 arabinogalactan-protein (AGP10) identical
to gi|10880497|gb|AAG24278; supported by Ceres cDNA
265772
Length = 127
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +1
Query: 118 PTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERSIS 246
P P SPL QPP++ P+ PT T SA P +S
Sbjct: 26 PAPT-RSPLPSPAQPPRTAAPTPSITPTPTPTPSATPTAAPVS 67
>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF00646: F-box domain, PF01344: Kelch motif
Length = 372
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 130 ANSPLSPVRQPPKSNIKPPTRISLP 204
A+ P QPP S++ PP+ SLP
Sbjct: 4 ADEPPQKTNQPPSSSLTPPSLFSLP 28
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +1
Query: 112 SLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
S P P SP PV PP + PP P FS P
Sbjct: 566 SPPPPHVYSPPPPVASPPPPSPPPPVHSPPPPPVFSPPP 604
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 106 VKSLPTPVANSPL-SPVRQPPK-SNIKPPTRISLPTRTFSANP 228
V S P PV + P SPV PP S+ PP S P TFS P
Sbjct: 599 VFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPP 641
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANP 228
V S P PVA SP P PP + PP S P FS P
Sbjct: 572 VYSPPPPVA-SPPPPSPPPPVHSPPPPPVFSPPPPVFSPPP 611
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPP-KSNIKPPTR 192
K+ K VK+ +P A P+ P PP K+ +KPPT+
Sbjct: 69 KSPVKPPVKAPVSPPAKPPVKPPVYPPTKAPVKPPTK 105
>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 828
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 31 PTVTMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSN 174
P N +F +N P G G + T A P P PP+SN
Sbjct: 229 PYPPQNSYFGYSNPVPGPGPGYYGSSSASTTAAATKPPPPPPSPPRSN 276
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +1
Query: 106 VKSLPTPVANSPLSPVRQPP-----KSNIKPPTRISLPTRTFSANPLERSISSSM 255
V S P PV + P PV+ PP + PP S PT+T +P R+ S ++
Sbjct: 643 VYSPPPPVYSPPPPPVKSPPPPPVYSPPLLPPKMSSPPTQTPVNSPPPRTPSQTV 697
>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 (GI:5669846),
PG2 (GI:5669848) from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 540
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 85 KTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTRTFSANPLERS 240
K+ K ++K+ P P +N V QPP+ PP + P P+E S
Sbjct: 70 KSKPKPKMKTQP-PKSNDGSPVVSQPPQVQQPPPPHVQPPPTPLPLQPVEDS 120
>At1g49480.1 68414.m05546 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 226
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 34 TVTMNRFFRENNIFDAPKTGGK-GRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPTR 210
+ + FF+E+ + PK K GR K P P + +P ++ K S R
Sbjct: 46 STAIQSFFKESKAEETPKVLKKRGRKKKNPNPEEVNSSTPGGDDSENRSKFYESASARKR 105
Query: 211 TFSANPLERSISSS 252
T +A ER+++++
Sbjct: 106 TVTAEERERAVNAA 119
>At1g09060.2 68414.m01011 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 537 MCCSVVFLYLQNCLQICPSCAYLYCL 460
MCC+V + + + + CP+C+Y CL
Sbjct: 330 MCCNVCRIPVVDYYRHCPNCSYDLCL 355
>At1g09060.1 68414.m01010 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam domain, PF02373:
jmjC domain
Length = 930
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 537 MCCSVVFLYLQNCLQICPSCAYLYCL 460
MCC+V + + + + CP+C+Y CL
Sbjct: 330 MCCNVCRIPVVDYYRHCPNCSYDLCL 355
>At5g45120.1 68418.m05539 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 491
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 531 CSVVFLYLQNCLQICPSCAYLY 466
CSV L C++ CPS AY Y
Sbjct: 171 CSVSMLLKSTCVRPCPSFAYTY 192
>At3g50380.1 68416.m05511 expressed protein
Length = 3071
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 483 TGKFASSSVNTKRLRSST*AIRDAPLAIIDSKT 581
+GKF +SS+N L + T A R ++++DS++
Sbjct: 1809 SGKFITSSINVSLLEARTLAWRTRIISLLDSRS 1841
>At3g20850.1 68416.m02636 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 134
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +1
Query: 40 TMNRFFRENNIFDAPKTGGKGRVKSLPTPVANSPLSPVRQPPKSNIKPPTRISLPT 207
T N + +++ +P + PTPV + P + + PP PP + PT
Sbjct: 32 TYNNYQPQHSPLPSPVYSSPADLPPPPTPVYSPPPADLPPPPTPYYSPPADLPPPT 87
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,342,311
Number of Sequences: 28952
Number of extensions: 378293
Number of successful extensions: 1482
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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