Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120437.Seq
(706 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 326 2e-88
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 171 2e-41
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 166 4e-40
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 163 5e-39
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 159 6e-38
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 143 3e-33
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 139 7e-32
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 132 1e-29
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 124 2e-27
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 123 4e-27
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 122 9e-27
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 121 2e-26
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 113 5e-24
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 50 7e-05
UniRef50_A6SM47 Cluster: Putative uncharacterized protein; n=2; ... 39 0.14
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 38 0.24
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 38 0.32
UniRef50_A7RML7 Cluster: Predicted protein; n=1; Nematostella ve... 36 1.3
UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma j... 35 1.7
UniRef50_A4R790 Cluster: Putative uncharacterized protein; n=2; ... 35 1.7
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 35 2.2
UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Re... 35 2.2
UniRef50_Q9VT00 Cluster: CG3654-PD; n=6; Diptera|Rep: CG3654-PD ... 35 2.2
UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces occiden... 34 3.0
UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A6CZL2 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A1Z722 Cluster: CG30494-PA; n=2; Drosophila melanogaste... 34 3.9
UniRef50_Q0UIK1 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 33 5.2
UniRef50_A2DQ88 Cluster: Putative uncharacterized protein; n=1; ... 33 5.2
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 33 6.8
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 33 6.8
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 33 6.8
UniRef50_UPI0000DBF4F0 Cluster: coiled-coil domain containing 15... 33 9.0
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 33 9.0
UniRef50_Q7U3X4 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A6RBF3 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 9.0
UniRef50_Q8N9H9 Cluster: Uncharacterized protein C1orf127; n=7; ... 33 9.0
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 326 bits (802), Expect = 2e-88
Identities = 156/178 (87%), Positives = 162/178 (91%)
Frame = +2
Query: 2 FDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVA 181
FDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISS EPTDTAIEPVYPGCDYKTVA
Sbjct: 1198 FDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSAEPTDTAIEPVYPGCDYKTVA 1257
Query: 182 ALMMEPRDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAK 361
ALMMEPRDPDSLEIRHKGEFSNQF + +SVIAPKHDSKYDPTLLSASIAK
Sbjct: 1258 ALMMEPRDPDSLEIRHKGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAK 1317
Query: 362 RLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVEVSISMSTHS 535
RLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE I+++ +S
Sbjct: 1318 RLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE-CINLNEYS 1374
Score = 147 bits (356), Expect = 3e-34
Identities = 85/159 (53%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Frame = +1
Query: 229 QGGVLQSISWVDLPYENGAQTHQRYSTQT*LEI*PDFTFGLHCQKTPF-PTLLPSLQTFS 405
+G WVDLPYENGAQT + + + P ++ F P+ LP + S
Sbjct: 1274 KGEFSNQFPWVDLPYENGAQTLSVIAPKHDSKYDPTLLSASIAKRLRFRPSFLPYRLSPS 1333
Query: 406 F*RSPWHIFVFIXXXXXXXXXXXXXXXXARPFR*SINLNEYSQLSNKTQAVIQANANRSD 585
+F + F INLNEYSQLSNKTQAVIQANANRSD
Sbjct: 1334 DEVLGTFLFSSLCRAYKRHPNHKVPFQPDL-FVECINLNEYSQLSNKTQAVIQANANRSD 1392
Query: 586 PDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDA 702
PDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDA
Sbjct: 1393 PDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDA 1431
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 171 bits (415), Expect = 2e-41
Identities = 85/162 (52%), Positives = 105/162 (64%), Gaps = 1/162 (0%)
Frame = +2
Query: 26 PRLDTHHLPETRRPLHFDIPSSLP-TKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPR 202
PR+DT LPETRRPLHFD+PS P S P+ TA EPVYPG ++ + A +
Sbjct: 1276 PRIDTSFLPETRRPLHFDLPSFRPQAPPPPSDPAPSGTAFEPVYPGETFENLVAHFLPAH 1335
Query: 203 DPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPS 382
DP EI + + SNQF +A +P++++AP HDSK+DPTLL+ASI KRLRFRPS
Sbjct: 1336 DPTDREIHWRRQLSNQFPHVDKEYHLAAQPMTLLAPIHDSKHDPTLLAASIQKRLRFRPS 1395
Query: 383 FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PYR+SP DE+LG L+ SLCRAY R P PF LFVE
Sbjct: 1396 ASPYRISPRDELLGQLLYESLCRAYHRSPTTTHPFDEALFVE 1437
Score = 119 bits (287), Expect = 6e-26
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I+LNE++QL++KTQAVI NA RSDPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLAL
Sbjct: 1439 IDLNEFAQLTSKTQAVIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGAWKACQTLAL 1498
Query: 691 MHDA 702
MHDA
Sbjct: 1499 MHDA 1502
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 166 bits (404), Expect = 4e-40
Identities = 82/162 (50%), Positives = 102/162 (62%), Gaps = 1/162 (0%)
Frame = +2
Query: 26 PRLDTHHLPETRRPLHFDIPSSLPTKVDI-SSVEPTDTAIEPVYPGCDYKTVAALMMEPR 202
P++ TH LPETRRPLH+DIPS++P S EPT EPVYPG ++ +AA +
Sbjct: 1414 PQVSTHFLPETRRPLHWDIPSAIPESATRPDSTEPTTCHPEPVYPGETFENLAAHFLPAH 1473
Query: 203 DPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPS 382
DP EI +G+ SNQF +A +P+S++A H K DPTLL ASI KRLRFRPS
Sbjct: 1474 DPTDREIYWQGQLSNQFPHMDKEFHLAAQPMSLLAAIHQEKQDPTLLPASIQKRLRFRPS 1533
Query: 383 FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PY+++P DE+LG LF LCRAY R P H F P LF E
Sbjct: 1534 DRPYQITPKDEILGQLLFEGLCRAYHRSPFHTEAFDPVLFAE 1575
Score = 121 bits (291), Expect = 2e-26
Identities = 53/64 (82%), Positives = 59/64 (92%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
INLNE++QLS+KTQA I NA RSDPDWR++AVRIFSKTQHK+NEGSIFG WKACQTLAL
Sbjct: 1577 INLNEFAQLSSKTQATIMGNARRSDPDWRWSAVRIFSKTQHKVNEGSIFGSWKACQTLAL 1636
Query: 691 MHDA 702
MHDA
Sbjct: 1637 MHDA 1640
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 163 bits (395), Expect = 5e-39
Identities = 80/166 (48%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 14 SSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDIS-SVEPTDTAIEPVYPGCDYKTVAALM 190
S+ P++ TH LPETRRPLHFDIPS+ D + + + AIEPVYPG ++++A+L
Sbjct: 1231 SANAPQVSTHFLPETRRPLHFDIPSARHQVADHPLAPDHSACAIEPVYPGESFESLASLF 1290
Query: 191 MEPRDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLR 370
+ P D +S E +GE SNQF + + S++AP H+SK+DPTLL ASI KRLR
Sbjct: 1291 LPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKHDPTLLPASIGKRLR 1350
Query: 371 FRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
FR S PY ++P DE+LG+ L+ + CRAY R P PF PDL+ E
Sbjct: 1351 FRHSEAPYVIAPRDEILGSLLYEAWCRAYHRSPRDVEPFDPDLYAE 1396
Score = 123 bits (296), Expect = 5e-27
Identities = 53/64 (82%), Positives = 61/64 (95%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
INLNE++QLS+KTQA I ANANRSDPDWR++AVRIF+KTQHK+NEGS+FG WKACQTLAL
Sbjct: 1398 INLNEFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLAL 1457
Query: 691 MHDA 702
MHDA
Sbjct: 1458 MHDA 1461
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 159 bits (386), Expect = 6e-38
Identities = 80/169 (47%), Positives = 107/169 (63%)
Frame = +2
Query: 29 RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDP 208
RLDTH LP +R PLHFD+P ++ +SV+P PVYPG + ++AA + DP
Sbjct: 1301 RLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYPGEFFDSLAAFFLPAHDP 1360
Query: 209 DSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSFL 388
+ EI HK + SNQF ++ +P S+I+ KH +DPTLL ASI KRLRFRPS
Sbjct: 1361 STREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDPTLLPASINKRLRFRPSDS 1420
Query: 389 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVEVSISMSTHS 535
P++++ D VLG LF SLCRAY R PN VPF P+LF E IS++ ++
Sbjct: 1421 PHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAE-CISLNEYA 1468
Score = 113 bits (272), Expect = 4e-24
Identities = 48/63 (76%), Positives = 58/63 (92%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I+LNEY+QLS+KTQ+ I ANA+RSDPDWR+T V+IF+K QHK+N+GSIFG WKACQTLAL
Sbjct: 1462 ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLAL 1521
Query: 691 MHD 699
MHD
Sbjct: 1522 MHD 1524
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 143 bits (347), Expect = 3e-33
Identities = 74/162 (45%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Frame = +2
Query: 26 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPT-DTAIEPVYPGCDYKTVAALMMEPR 202
PRL+ HLP TR PLH D+ ++P+ SSV+ T I P G ++ +AA +
Sbjct: 1295 PRLEVLHLPPTRLPLHLDLLPTVPSSSSFSSVDHLFPTPISPAICGYTFENLAAFFLPAH 1354
Query: 203 DPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPS 382
DPD E+ + SNQF + ++ +P S++AP H DPTLL SI KRLRFR S
Sbjct: 1355 DPDLKEVLINDQKSNQFPYLDAPFELSCQPSSLLAPIHKPASDPTLLPGSIKKRLRFRAS 1414
Query: 383 FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PY ++PSD++LG LFSSLC AY R+PN +PFQP+LF E
Sbjct: 1415 SSPYSITPSDQLLGQHLFSSLCLAYGRNPNSVLPFQPELFSE 1456
Score = 102 bits (244), Expect = 1e-20
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I +N+Y+QLS+KTQA I AN RSDPDWR TAVRIF+K QHK+N+ SIF WKACQTLAL
Sbjct: 1458 ICINDYAQLSSKTQATIVANHQRSDPDWRLTAVRIFAKAQHKVNDASIFSGWKACQTLAL 1517
Query: 691 MH 696
MH
Sbjct: 1518 MH 1519
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 139 bits (336), Expect = 7e-32
Identities = 74/162 (45%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Frame = +2
Query: 26 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRD 205
P +D LP RRPLH ++ S++ + S T AI VYPG ++ +AA + D
Sbjct: 1232 PEVDDTFLPTWRRPLHRNLASAVHSNCPAQSTHVTPAAITAVYPGESFENLAAHFLPAHD 1291
Query: 206 PDSLEIRHKGEFSNQFHGSISL-MRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPS 382
P+ EI H+GEFS QF ++ ++ + ++IA KHDSK DPTLL ASI KRL FRPS
Sbjct: 1292 PEIKEILHRGEFSAQFPILLNQDFSLSAQSSTLIAAKHDSKRDPTLLVASITKRLCFRPS 1351
Query: 383 FLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
Y+LS D++LG L+ S CRAY RHP VPF LF E
Sbjct: 1352 DSSYQLSSKDQILGLTLYHSWCRAYNRHPQAVVPFDELLFAE 1393
Score = 113 bits (272), Expect = 4e-24
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
IN+NE++Q SNKT++ I ANA+RSDPDWR TAV+IFSKTQHKINE SIFG WKACQTLAL
Sbjct: 1395 ININEFAQSSNKTKSTIIANASRSDPDWRITAVKIFSKTQHKINEASIFGSWKACQTLAL 1454
Query: 691 MHD 699
MHD
Sbjct: 1455 MHD 1457
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 132 bits (318), Expect = 1e-29
Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Frame = +2
Query: 11 QSSAIPRLDTHHLPETRRPLHFDI-PSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAAL 187
Q A PRLDTH LP TR PL ++ P+ L + +T PVYPG +++ +AA
Sbjct: 1324 QGQADPRLDTHFLPPTRLPLQSELLPAQLSQTTKPTDSFTNNTPFTPVYPGENFENLAAF 1383
Query: 188 MMEPRDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRL 367
+ DP+ E+ + + S QF ++ +P S+IA KH DPTLL SI KRL
Sbjct: 1384 FLPAHDPELKEVTRRDQTSAQFPWFDRPFSLSCQPSSLIAAKHSPSQDPTLLPFSIPKRL 1443
Query: 368 RFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
RFR S P+ LS D +LG LF +LC+AY+R+P H PF P LF E
Sbjct: 1444 RFRKSDNPHVLSAIDVLLGNQLFFNLCKAYRRNPTHVGPFNPALFAE 1490
Score = 108 bits (259), Expect = 2e-22
Identities = 46/63 (73%), Positives = 57/63 (90%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I LN+Y+QLS+KTQA + AN +RSDPDWR+TAV+IF+K+QHK+N+ SIFG WKACQTLAL
Sbjct: 1492 IALNDYAQLSSKTQATLVANHSRSDPDWRHTAVKIFAKSQHKVNDASIFGNWKACQTLAL 1551
Query: 691 MHD 699
MHD
Sbjct: 1552 MHD 1554
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 124 bits (300), Expect = 2e-27
Identities = 67/161 (41%), Positives = 89/161 (55%), Gaps = 1/161 (0%)
Frame = +2
Query: 29 RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPT-DTAIEPVYPGCDYKTVAALMMEPRD 205
RLD HLP TR L D+ S LP+ S + T P YP ++ +AA + D
Sbjct: 1199 RLDVLHLPPTRLILQSDLVSGLPSDPSTSLCDAIFGTPFTPAYPEETFENLAAFFLPAHD 1258
Query: 206 PDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSF 385
PD E+ ++ + S+QF S ++ +P S+IA H D TLL S+ KRLRFRPS
Sbjct: 1259 PDLKEMLYRDDASSQFPYLDSPFLLSCQPSSLIAAIHKPATDSTLLPLSVNKRLRFRPST 1318
Query: 386 LPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PY +P+D +LG LF SLC Y RHP+ +PF P LF E
Sbjct: 1319 SPYCFTPNDFILGEHLFQSLCSVYNRHPSESIPFDPVLFAE 1359
Score = 111 bits (267), Expect = 2e-23
Identities = 47/63 (74%), Positives = 58/63 (92%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I +N+Y+QLS+KT+A I ANA RSDPDWRYT+V+IF+K+QHK+N+GSIFG WKACQTLAL
Sbjct: 1361 ICINDYAQLSSKTKATIVANAERSDPDWRYTSVKIFAKSQHKVNDGSIFGNWKACQTLAL 1420
Query: 691 MHD 699
MHD
Sbjct: 1421 MHD 1423
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 123 bits (297), Expect = 4e-27
Identities = 64/160 (40%), Positives = 90/160 (56%)
Frame = +2
Query: 29 RLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDP 208
RL T HLP TR PLHFD+ S P+ V SS ++ + G ++ +AA + DP
Sbjct: 1227 RLTTLHLPPTRLPLHFDLESCNPSTVSTSSTSNSEVPFTHAFLGESFEELAAHFLPAHDP 1286
Query: 209 DSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSFL 388
D E+ + S QF ++ +P S++A H DPTLL SI+KRLRFR S
Sbjct: 1287 DLKEVTVGDQTSQQFPYLDQPYTLSCQPSSLLAASHKPASDPTLLIFSISKRLRFRASSS 1346
Query: 389 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PY +P+D +LG L+++ C+A+ R PN +PF P LF E
Sbjct: 1347 PYAFTPNDLILGHLLYTNWCKAFGRCPNSTIPFNPALFAE 1386
Score = 115 bits (277), Expect = 1e-24
Identities = 50/63 (79%), Positives = 58/63 (92%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I LNEY+QLS+KTQA I +NA+RSDPDWRYT VRIF+K+QHK+N+GSIFG WKACQTLAL
Sbjct: 1388 ICLNEYAQLSSKTQATIVSNASRSDPDWRYTVVRIFAKSQHKVNDGSIFGSWKACQTLAL 1447
Query: 691 MHD 699
MHD
Sbjct: 1448 MHD 1450
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 122 bits (294), Expect = 9e-27
Identities = 66/159 (41%), Positives = 92/159 (57%)
Frame = +2
Query: 26 PRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRD 205
PR++ + ETR PL ++ +LP++ + S + E VYPG D + +A + D
Sbjct: 1412 PRVNPTFVAETRLPLQSELAPTLPSQPEPSPTYHSPATFETVYPGVDGEALARTFLAATD 1471
Query: 206 PDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSF 385
P LEI + +SNQF +A P++++AP H+ K DPTLL AS+AKRLRFR S
Sbjct: 1472 PLELEIFFRNNWSNQFPFINRPDTVACNPLTLVAPTHNQKQDPTLLHASLAKRLRFRDST 1531
Query: 386 LPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 502
PY ++ D+ LG L+ SL RAY R P VPF P LF
Sbjct: 1532 APYTITAKDQALGYILYHSLQRAYCRSP-EPVPFDPVLF 1569
Score = 106 bits (255), Expect = 5e-22
Identities = 46/60 (76%), Positives = 54/60 (90%)
Frame = +1
Query: 520 NEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHD 699
N+++QL++KTQA IQANA RSDPDWR+T VRIFSKTQHK+NE S+F WKACQTLALMHD
Sbjct: 1576 NDFAQLTSKTQATIQANAFRSDPDWRHTFVRIFSKTQHKVNENSLFTSWKACQTLALMHD 1635
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 121 bits (292), Expect = 2e-26
Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Frame = +2
Query: 29 RLDTHHLPETRRPLHFDIPSSLPTKVDIS-SVEPTDTAIEPVYPGCDYKTVAALMMEPRD 205
RL HLP TR LH DI + P+ S EP + VYPG D+ T+AA + D
Sbjct: 1203 RLSVLHLPPTRMTLHSDINITAPSSSSFQPSDEPVPSDHTAVYPGFDFFTLAAHFLPAHD 1262
Query: 206 PDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSF 385
P+ EI K + S QF ++ + S+I+ +H D TLL AS+ KRLRFRP+
Sbjct: 1263 PEVKEIELKDQTSQQFPWLNLDFHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTA 1322
Query: 386 LPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
PY+++PSD LG L+ S C+ Y+R PN ++PF LF+E
Sbjct: 1323 APYQITPSDSFLGNCLYRSWCQVYRRDPNVRLPFNEALFLE 1363
Score = 113 bits (273), Expect = 3e-24
Identities = 48/63 (76%), Positives = 59/63 (93%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I +N+Y+QLS+KTQA I ANA+RSDPDWR+T V+IF+K+QHK+N+GSIFGPWKACQTLAL
Sbjct: 1365 IAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAKSQHKVNDGSIFGPWKACQTLAL 1424
Query: 691 MHD 699
MHD
Sbjct: 1425 MHD 1427
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 113 bits (271), Expect = 5e-24
Identities = 49/64 (76%), Positives = 59/64 (92%)
Frame = +1
Query: 511 INLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLAL 690
I LNE++QLS+KTQA+I AN +RSDPDWR++AVRIF+KTQHK+N+ SIFG WKACQTLAL
Sbjct: 1471 IALNEFAQLSSKTQAIIMANRDRSDPDWRWSAVRIFAKTQHKVNDHSIFGGWKACQTLAL 1530
Query: 691 MHDA 702
MHDA
Sbjct: 1531 MHDA 1534
Score = 69.7 bits (163), Expect = 6e-11
Identities = 32/58 (55%), Positives = 39/58 (67%)
Frame = +2
Query: 335 TLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVE 508
T L ASI KRLRFRPS PYR++ DE+LG+ LF + C A R P+ VPF +LF E
Sbjct: 1412 TFLPASIGKRLRFRPSSAPYRITSKDEILGSLLFDAHCTAMLRSPSASVPFDENLFAE 1469
Score = 62.9 bits (146), Expect = 7e-09
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 SAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTA-IEPVYPGCDYKTVA 181
S P++ TH LPETRRPLHFD+ S++P S V+P D A I PVYPG ++ +A
Sbjct: 1355 SNAPQVSTHFLPETRRPLHFDVASAVPEPAKPSGVDPLDLASITPVYPGESFENLA 1410
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 49.6 bits (113), Expect = 7e-05
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1
Query: 628 QHKINEGSIFGPWKACQTLALMHDA 702
QHK+NE SIF WKACQTLAL HDA
Sbjct: 1 QHKVNEASIFSDWKACQTLALAHDA 25
>UniRef50_A6SM47 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 453
Score = 38.7 bits (86), Expect = 0.14
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +2
Query: 95 PTK-VDISSV-EPTDTAIEPVYPGCDYKTVAALM-MEPRDPDSLEIRHKGEFSNQFHGSI 265
PTK +D+ EP + E P + T +A+ ++P DP LE H+ + +
Sbjct: 231 PTKPIDLKPASEPASSVPEIPQPSIHFPTASAVPDLDPNDPSFLENLHQKYYPSLPADPS 290
Query: 266 SLMRMAPKPISVIAPKHDSKYDPTL-LSASIAKRLRFRPSFLPYRLS 403
L MAP P +S Y P A+ A R FR LP R++
Sbjct: 291 KLAWMAPIPTHGSVADQESPYYPAADALAASALRFDFRGGLLPPRIA 337
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 37.9 bits (84), Expect = 0.24
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 544 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLA 687
K++ + ++ RSD DW+ V +F K+Q+ EG +F KA QTLA
Sbjct: 1258 KSEKMWANHSERSDIDWKLDHVFLFMKSQYCTKEGKMFTEAKAGQTLA 1305
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 37.5 bits (83), Expect = 0.32
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 544 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMH 696
K+ A ++ ++ RSDPDW IF K+Q + + KA QTLA H
Sbjct: 1713 KSMATLENHSGRSDPDWEVEKALIFMKSQLCTKFDNRYRDAKAGQTLACFH 1763
>UniRef50_A7RML7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 155
Score = 35.5 bits (78), Expect = 1.3
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +2
Query: 161 CDYKTVAALMMEPRDPDSLEIRHKGEFSN-QFHGSISLMRMAPKPISVIAPKHDSKYD-- 331
C YK AA+ E + + HK E+S FH S + + + ++ +KY+
Sbjct: 10 CGYKDPAAVFSEGNQVWAKFVSHKTEYSGYNFHASYETVNFHSSSGEISSYEYPNKYENH 69
Query: 332 -PTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFL 433
+ S S + R++ +F + L PSD + F+
Sbjct: 70 VTCIWSISGSNWYRYKLTFESFDLEPSDNCVADFV 104
>UniRef50_Q5BRV7 Cluster: SJCHGC07245 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC07245 protein - Schistosoma
japonicum (Blood fluke)
Length = 82
Score = 35.1 bits (77), Expect = 1.7
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 2 FDLQSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDI 112
F+L +S IP +PE+ PL F + S+ PTKVD+
Sbjct: 9 FNLVTSLIPESSLSKIPESPMPLIFGLSSNWPTKVDL 45
>UniRef50_A4R790 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 431
Score = 35.1 bits (77), Expect = 1.7
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 191 MEPRDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAK-RL 367
++P DP+ LE H F N L MAP P +S Y P S ++++ R
Sbjct: 241 LDPADPNFLETLHSKYFPNLPADPARLAWMAPVPTEDSPADRESPYYPGQTSLAVSQLRF 300
Query: 368 RFRPSFLPYRLS 403
F+ LP R+S
Sbjct: 301 DFQGRLLPPRVS 312
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 34.7 bits (76), Expect = 2.2
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +1
Query: 526 YSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTL 684
+ + ++K+ A I+ ++ RS DW +IFSK+QH + F KA Q++
Sbjct: 1648 FDKKTSKSAATIENHSGRSCRDWLIDTAQIFSKSQHCTKFDNRFRVAKAAQSI 1700
>UniRef50_A2SZW6 Cluster: Polyprotein; n=1; Blackberry virus X|Rep:
Polyprotein - Blackberry virus X
Length = 244
Score = 34.7 bits (76), Expect = 2.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 511 INLNEYSQ-LSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 630
+++NE+ + K +A + N+ RSDPDW+ + +F K Q
Sbjct: 170 VSMNEFKENFFKKDEATMVRNSARSDPDWKKNEIFLFMKQQ 210
>UniRef50_Q9VT00 Cluster: CG3654-PD; n=6; Diptera|Rep: CG3654-PD -
Drosophila melanogaster (Fruit fly)
Length = 2351
Score = 34.7 bits (76), Expect = 2.2
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 201 GTPTPLKSATRGSSPINFMGRSPL*EWRPNPSAL*HPNMTRN-MTRLYFRPPLPKDSVSD 377
G P+ K+ ++GSSP+ + ++P + P A P + N +T Y R PLP+ S S
Sbjct: 968 GAPSGSKTPSQGSSPLKY--QTPPTTYPPPIEAYQCPKINPNFLTPKYERSPLPRSSTSS 1025
Query: 378 PPS 386
PS
Sbjct: 1026 FPS 1028
>UniRef50_Q96TV0 Cluster: Mig1 protein; n=1; Debaryomyces
occidentalis|Rep: Mig1 protein - Debaryomyces
occidentalis (Yeast) (Schwanniomyces occidentalis)
Length = 458
Score = 34.3 bits (75), Expect = 3.0
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +3
Query: 198 PGTPTPLKSATRGSSPINFMGRSPL*EWRPNPSAL*HPNMTRNMTRLYFRPPLPKDSVSD 377
P +PTP KS T +SPI +G S N + N + N+T L+ P + S
Sbjct: 320 PNSPTPTKSFTLPNSPI--LGLSST-----NTPIISANNSSTNLTSLFMTPAIRSTSYEQ 372
Query: 378 PPSF 389
PPS+
Sbjct: 373 PPSY 376
>UniRef50_A7BV58 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 402
Score = 33.9 bits (74), Expect = 3.9
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 5 DLQSSAIPRLDTHHLP-ETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVA 181
+ + ++P+ D +P E +P+ IP+++PTK +++ E T T V P + TV
Sbjct: 93 ETSNRSVPKTDDISVPTEKSKPVDTKIPATVPTKSIVATTELTATQSTTV-PAAEPTTVP 151
Query: 182 ALMMEPRDP 208
+P DP
Sbjct: 152 ESSPKPIDP 160
>UniRef50_A6CZL2 Cluster: Putative uncharacterized protein; n=1;
Vibrio shilonii AK1|Rep: Putative uncharacterized protein
- Vibrio shilonii AK1
Length = 1131
Score = 33.9 bits (74), Expect = 3.9
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +2
Query: 128 TDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFS-NQFHGSISLMRMAPKPIS-- 298
T IEPV P D K P D D +E S + FH +S + APKP+
Sbjct: 768 TTINIEPVEPAKDEKATEK-EQTPIDQDQMEAMRLINVSFSDFHNYVSSVNDAPKPVDQW 826
Query: 299 VIAPKHDSKYDPTLLSASIAKRLRF 373
+ A K Y T A A++L +
Sbjct: 827 LAAVKAAKAYLDTFYQAEDARKLAY 851
>UniRef50_A1Z722 Cluster: CG30494-PA; n=2; Drosophila
melanogaster|Rep: CG30494-PA - Drosophila melanogaster
(Fruit fly)
Length = 2262
Score = 33.9 bits (74), Expect = 3.9
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 41 HHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEP-VYPGCDYKTVAALMMEPRD 205
H LPE P +P+SLPT + I + +PTD +P + +TV A M++P D
Sbjct: 1470 HELPENLVPQGQSVPASLPTNLTIQT-QPTDLETQPSMELILQTETVDAEMVKPVD 1524
>UniRef50_Q0UIK1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1149
Score = 33.9 bits (74), Expect = 3.9
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 4/138 (2%)
Frame = +2
Query: 11 QSSAIPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALM 190
Q + PR H+ RR I + D SV P A P + + VA+
Sbjct: 370 QINITPRHSQDHINAPRRQSQDQIHAPRRQSQDQISVAPRQAA-----PPQEQRNVASRQ 424
Query: 191 ME--PRDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISV--IAPKHDSKYDPTLLSASIA 358
P DP + RH Q H ++ R AP P V + + + DP L+ A
Sbjct: 425 SHAPPHDPMDVASRHS-RGPPQDHIDVAPRRSAPPPQQVQPVQTQRSIQPDPRLIQAQQQ 483
Query: 359 KRLRFRPSFLPYRLSPSD 412
R ++ + +P+ P+D
Sbjct: 484 ARQNYQQNQVPHNDYPTD 501
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 33.5 bits (73), Expect = 5.2
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 517 LNEYSQLS-NKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTL 684
L+E+ + +K+ A+I+ +ANRS DW +FSK+Q + F KA QT+
Sbjct: 1597 LHEFEEKKVSKSAAIIENHANRSCSDWLADVGLVFSKSQICSKWDNRFRSAKAAQTI 1653
>UniRef50_A2DQ88 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1143
Score = 33.5 bits (73), Expect = 5.2
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -3
Query: 530 EYSLR-LILQRKGRAEKELYDWDVVYRLDIEMKTKMCQGLRQKEKVCKE 387
E LR L+L +K + +KE+ DW + D E K +M + +Q+ K+C+E
Sbjct: 813 ENDLRSLLLSKKEKKDKEIQDWQRQIKQDEEKKKEMEE--QQRRKLCRE 859
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 33.1 bits (72), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 520 NEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQ 630
N+ L++K A + NA RSDP W +++F K Q
Sbjct: 1561 NDTVHLTSKPLATLINNAERSDPSWSLNMIKLFIKGQ 1597
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 33.1 bits (72), Expect = 6.8
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 538 SNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMHDA 702
++K+ A I+ +A RS DW IF K+QH + KA QTLA A
Sbjct: 1844 ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHA 1898
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 33.1 bits (72), Expect = 6.8
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 523 EYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLA 687
E ++LS K+ A I A++ RSD DW + +F K+Q F KA QTLA
Sbjct: 1530 EETKLS-KSAATIGAHSQRSDSDWPLDKIFLFMKSQLCTKFEKRFTEAKAGQTLA 1583
>UniRef50_UPI0000DBF4F0 Cluster: coiled-coil domain containing 15;
n=2; Eutheria|Rep: coiled-coil domain containing 15 -
Rattus norvegicus
Length = 715
Score = 32.7 bits (71), Expect = 9.0
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 80 IPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALM-MEPRDPDSLEIR 226
+P S +D+ +VEP + IEP PG + T AA M + +PD ++
Sbjct: 295 LPESQSDVIDVQAVEPKASRIEPKEPGGEPDTQAAGMEFQTTEPDGQAVK 344
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 544 KTQAVIQANANRSDPDWRYTAVRIFSKTQHKINEGSIFGPWKACQTLALMH 696
K+ A I+ ++ RS+ DW+ +F K+Q+ + F KA QT+ H
Sbjct: 1773 KSTATIENHSGRSNLDWKIDTGLVFMKSQNCTKFENRFRDAKAAQTIVCFH 1823
>UniRef50_Q7U3X4 Cluster: Putative uncharacterized protein; n=1;
Synechococcus sp. WH 8102|Rep: Putative uncharacterized
protein - Synechococcus sp. (strain WH8102)
Length = 2014
Score = 32.7 bits (71), Expect = 9.0
Identities = 23/61 (37%), Positives = 25/61 (40%)
Frame = +3
Query: 204 TPTPLKSATRGSSPINFMGRSPL*EWRPNPSAL*HPNMTRNMTRLYFRPPLPKDSVSDPP 383
TPTP SAT SP SP P+PSA P T T P P S + P
Sbjct: 1597 TPTPTPSATPTPSPSATPTPSPSATPTPSPSATPTPTPTPTPTPTPSATPTPSPSATPTP 1656
Query: 384 S 386
S
Sbjct: 1657 S 1657
>UniRef50_A6RBF3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 702
Score = 32.7 bits (71), Expect = 9.0
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Frame = +2
Query: 50 PETRRPLHFDIPSSLPTKVDISSVEPT-------DTAIEPVYPGCDYKTVAALMMEPRDP 208
P R+ L PSS P++V SV P D+ + V G +T + +
Sbjct: 394 PRRRKKLTSREPSSAPSEVPSPSVSPARNHQRRLDSLFQDVSEGLQRRTEGWGVTKAVRG 453
Query: 209 DSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSFL 388
+E R + H S S P P + +P HDS P + A+I +RL R S L
Sbjct: 454 AMVEARRNIQ---NMHSSAS----TPAPRRIESPPHDSPSPPHISLATI-RRLNSRISAL 505
Query: 389 PYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDL------FVEVSISMSTHSFPTRL 550
R +LG + + + HPN+ DL FV+V + T P
Sbjct: 506 ESRSQTLARMLGEAI--NELHTKQVHPNNSGIEAIDLALAKLQFVQVYLEDPTIPIPDEE 563
Query: 551 KLSSK 565
KL+++
Sbjct: 564 KLATQ 568
>UniRef50_Q8N9H9 Cluster: Uncharacterized protein C1orf127; n=7;
Catarrhini|Rep: Uncharacterized protein C1orf127 - Homo
sapiens (Human)
Length = 656
Score = 32.7 bits (71), Expect = 9.0
Identities = 23/65 (35%), Positives = 28/65 (43%)
Frame = +3
Query: 198 PGTPTPLKSATRGSSPINFMGRSPL*EWRPNPSAL*HPNMTRNMTRLYFRPPLPKDSVSD 377
PG PTP AT S P+ + SP WRP P HP +T ++ P P
Sbjct: 306 PGHPTP--PATLPSEPVEGVQASP---WRPRPVLPTHPALTLPVSSDASSPSPPAPRPER 360
Query: 378 PPSFL 392
P S L
Sbjct: 361 PESLL 365
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 791,418,627
Number of Sequences: 1657284
Number of extensions: 18573126
Number of successful extensions: 49893
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 47505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49837
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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