Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120437.Seq
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.8  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 195 NPGTPTPLKSATRGSSPINFMGRSPL*EWRP 287
           +PGTP PL  A      ++      + +W P
Sbjct: 91  SPGTPGPLSQAPASQQSLDASDPDAMGKWCP 121


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 195 NPGTPTPLKSATRGSSPINFMGRSPL*EWRP 287
           +PGTP PL  A      ++      + +W P
Sbjct: 247 SPGTPGPLSQAPASQQSLDASDPDAMGKWCP 277


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 200 RDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAP 310
           +DP+SL I  KG+F +   G    M   P  +  I P
Sbjct: 307 QDPESLLINGKGQFRDPNTG---FMTNTPLEVFTITP 340


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 200 RDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAP 310
           +DP+SL I  KG+F +   G    M   P  +  I P
Sbjct: 307 QDPESLLINGKGQFRDPNTG---FMTNTPLEVFTITP 340


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 312 NMTRNMTRLYFRPPLPKDSVSDPPSF 389
           N+T +     +R P P+   S PP +
Sbjct: 31  NLTTSKLLYTYRQPYPRQKKSHPPQW 56


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 95  GERKEYRNGEDDGFLEDDECQVSGWLR 15
           G+     N EDD   E  + Q+  W+R
Sbjct: 189 GQGSSTNNDEDDDDEETGDRQIYPWMR 215


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 95  GERKEYRNGEDDGFLEDDECQVSGWLR 15
           G+     N EDD   E  + Q+  W+R
Sbjct: 189 GQGSSTNNDEDDDDEETGDRQIYPWMR 215


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 95  GERKEYRNGEDDGFLEDDECQVSGWLR 15
           G+     N EDD   E  + Q+  W+R
Sbjct: 189 GQGSSTNNDEDDDDEETGDRQIYPWMR 215


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 254  EIDWRTPPCGGFQGSRGP 201
            ++DW  P C     ++GP
Sbjct: 1941 DLDWEYPKCWQVDCNKGP 1958



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 254  EIDWRTPPCGGFQGSRGP 201
            ++DW  P C     ++GP
Sbjct: 2439 DLDWEYPKCWQVDCNKGP 2456


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,375
Number of Sequences: 336
Number of extensions: 4400
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)