Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120437.Seq
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 27 2.6
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.6
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.6
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 27 3.5
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 27 3.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 3.5
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 27 3.5
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 26 6.0
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 26 6.0
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 6.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 6.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 6.0
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 26 6.0
SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.0
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +1
Query: 187 NDGTPGPRLP*NPPQGGVLQSISWVDLPYENGAQTHQRYSTQT*LEI*PDFTFGLHCQKT 366
+ +P P L NP ++ W+D P+ G Q T T E DF L
Sbjct: 127 SQSSPSPSL--NPESWTNFANMLWLDQPFGTGYSQGQAAYTTTIEEASSDFVNALKSFYQ 184
Query: 367 PFPTLL 384
FP L+
Sbjct: 185 KFPHLM 190
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 167 YKTVAALMMEPRDPDSLEIRHKGEFSNQF 253
++ VA+ + E P LEIR + EFS F
Sbjct: 161 FQRVASALYEESSPLELEIRSESEFSKMF 189
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 449 DIEMKTKMCQGLRQKEKVCKEGRRVGNGVFWQWRPKVK 336
++E + QG Q+ K KEG + + QWR VK
Sbjct: 905 ELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSNVK 942
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 458 KRHPNHKVPFQPDLFVEVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKL-SI 634
+RH +++V + D +E I + F TRL KR + + +P +A +Q L ++
Sbjct: 22 RRHSSYQVRDEEDDVLEEFIVLKLDLFLTRLNHRMKRLEELGLPNRKDAAAATYQFLANL 81
Query: 635 KSTKAQFSALGK 670
+++ + LGK
Sbjct: 82 QASFLGTTILGK 93
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 530 HSFPTRLKLSSKRTQIVRIP 589
H P R++LSS+ QI RIP
Sbjct: 5 HGTPQRIQLSSRAIQICRIP 24
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 195 NPGTPTPLKSATRGSSPINFM 257
+PGTPT LKS + SP +F+
Sbjct: 344 DPGTPTSLKSPSLRKSPSSFV 364
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 395 RLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLFVEVSISMSTHSFPTRLKLSSKRT 571
RL D + S +C +R P + + F PDLF ++ S + +KL + T
Sbjct: 180 RLDDPDTSVVNAAVSVICELARRAPKNYLEFAPDLFHLLTTSSNNWMLIKLIKLFASLT 238
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 136 GVCRFNTTNVHFGRERGRNIEME 68
G R+ + N H GRE+ R ++E
Sbjct: 183 GTARYMSINTHLGREQSRRDDLE 205
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 136 GVCRFNTTNVHFGRERGRNIEME 68
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 136 GVCRFNTTNVHFGRERGRNIEME 68
G R+ + N H GRE+ R ++E
Sbjct: 180 GTARYMSINTHLGREQSRRDDLE 202
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 369 VSDPPSFLTDFLLLTKSLAHFCFHL 443
+ D P+ L F LL+K ++HF F L
Sbjct: 309 IVDQPANLLKFSLLSKKVSHFLFTL 333
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 6.0
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = +3
Query: 282 RPNPSAL*HPNMTRNMTRL-YFRPPLPKDSVSDPPSFLT-DFLLLT-----KSLAHFCFH 440
RP P+A+ ++ + + + PP V P S L D+ LL K L
Sbjct: 556 RPRPAAVCQVSLREDYWKSPHPIPPSSYSFVESPSSILRLDYFLLFDLKFWKRLRGLLSK 615
Query: 441 LYVEPINDIPIIKFLFSPTFSLKYQSQ*VLTAF 539
LYV P N + K L F + Y+S + TAF
Sbjct: 616 LYVVPFNRNLLFKRLMGIRFVIHYRS--LATAF 646
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 200 RDPDSLEIRHKGEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKR 364
R+ SL GE + + ++ + PKPI +++ K + P AKR
Sbjct: 207 REAKSLFSSQDGEIIRRLNAETTVEKELPKPIDLVSEKLATSNIPNFQPPKYAKR 261
>SPCC1795.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 112
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 125 PTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGE 238
PT T+ PVY G ++A +PR +R + E
Sbjct: 4 PTTTSYSPVYTGNPLYDISASQSDPRQRIRKNVRFQTE 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,620
Number of Sequences: 5004
Number of extensions: 75009
Number of successful extensions: 288
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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