Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120437.Seq
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763     31   0.89 
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    30   2.1  
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458     29   2.7  
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    29   2.7  
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558...    29   2.7  
06_01_0730 + 5370575-5370761,5371395-5371438,5372057-5372204,537...    29   4.8  
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    28   6.3  
07_01_0986 - 8314733-8314783,8315895-8318381                           28   6.3  
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221...    28   6.3  
09_02_0411 + 8721855-8722232                                           28   8.3  

>03_04_0051 + 16852980-16852991,16853952-16854033,16854108-16854763
          Length = 249

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 284 APFS*GRS--THEIDWRTPPCGGFQGSRGPGVPSL--ELPQFCS 165
           AP   G S  T+   W  PP GG+ G R P  P    E P  CS
Sbjct: 204 APLEWGHSAPTYGAGWAPPPAGGYYGGRSPYQPPYYDEEPAGCS 247


>09_06_0317 - 22265786-22267618,22267874-22268446,22268546-22268677,
            22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 4/120 (3%)
 Frame = +3

Query: 282  RPNPSAL*HPNMTRNMTRLYFRPPLPKDSVSDPPSFLTDFLLLTKSLAHFCFHLYVEP-- 455
            +P  S L  P+ T +   L F  P  K   S+  S        +K L H    +  EP  
Sbjct: 807  QPCKSELNTPDDTASAPSLPFVQPSVKKETSNQNSSAP-----SKVLVHQPVEIKKEPAE 861

Query: 456  INDIPIIKFLFSPTFSLKYQSQ*VLTAF-QQDSSCHP-SERKSFGSRLAVHCCPHIFKNS 629
            I  + +I F F P    KY +  + T F  Q   C+    R S    L+VH   H  K S
Sbjct: 862  IKMVDLIGFDFKPEMLRKYHAHVISTLFDDQSHQCNTCGLRFSLEEELSVHTACHGSKQS 921


>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
          Length = 1217

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 390 GRKEG--RKRSLLAMEAESKVGSYFESCLGAITLMGLGAI 277
           GRK+   R R LL M+++S       SC+  I+++G+G I
Sbjct: 178 GRKDDLDRLRDLLLMQSDSSAPGPSNSCVPVISIIGVGGI 217


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 398 VCKEGRRVGNGVFWQWRPKVKSGHISSHVWVL*R*WVWA 282
           V  EG   G G  W WR KVK   ++   WVL    +WA
Sbjct: 18  VAVEGDEAGKGRRW-WRVKVKLSTVAVVAWVLASAALWA 55


>02_01_0753 -
           5586705-5586766,5587864-5588056,5588154-5588423,
           5588522-5588687,5589049-5589209,5590065-5590181,
           5590269-5590549,5590750-5590833,5591100-5592542,
           5593167-5593575
          Length = 1061

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -1

Query: 691 SRLMSGMLSKGRKLSLR*FYAEFLKICGQ--QCTASRDPN-----DLRSLG*QLESCWK 536
           S ++ GM+  G K  LR  YA+F ++  Q  +  A  D N      L SL  Q ES WK
Sbjct: 482 STMLKGMIESGTKQGLREGYAQFTEVLSQKTKVIAPDDSNLSKDEILSSLQTQEESIWK 540


>06_01_0730 +
           5370575-5370761,5371395-5371438,5372057-5372204,
           5372289-5372397,5373349-5373863,5374571-5374808,
           5375296-5375560,5375740-5375844,5375950-5376015,
           5376562-5377020,5377267-5377464,5378149-5378211
          Length = 798

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 458 KRHPNHKVPFQPDLFVEVSIS-MSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQKLSI 634
           + +PN  +P++  ++  V +  M+  +FPT +   S     +++P GG+ L+A   K  +
Sbjct: 596 QHYPNF-MPYRHHIYSPVYVPPMAMPNFPTNIPYPSNGNNYLQMPGGGSHLAAGGMKYGV 654

Query: 635 KSTK 646
              K
Sbjct: 655 SQYK 658


>11_04_0340 -
           16536571-16536705,16536820-16536951,16537265-16538106,
           16538480-16538940,16539032-16540314,16540423-16541627,
           16541857-16542157
          Length = 1452

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 531 TAFQQDSSCHPSERKSFGS--RLAVHCCPHIFK 623
           T FQ  SS    ++  F S  +L + CCPHI K
Sbjct: 899 TPFQSFSSFRTEQKSWFPSLNKLTIGCCPHISK 931


>07_01_0986 - 8314733-8314783,8315895-8318381
          Length = 845

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = +2

Query: 323 KYDPTLLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDLF 502
           + D  +L+ ++ +RL+FRP+F  Y          T L  +L  A  R P   +     + 
Sbjct: 159 RLDDAVLAVAVMRRLKFRPAFSAY----------TVLIGALAEA--RRPERALELLRQM- 205

Query: 503 VEVSISMSTHSFPTRLKLSSKRTQI 577
            EV   +  H F T ++  ++  Q+
Sbjct: 206 QEVGYEVGVHLFTTLVRALAREGQV 230


>02_01_0325 -
           2208480-2208674,2208772-2210609,2210980-2211109,
           2211231-2211270,2211409-2211531,2211940-2212030,
           2212396-2212480,2212565-2212720,2212797-2212853,
           2212940-2213110,2213313-2213330,2213479-2213551,
           2213754-2213839,2214348-2214466,2214542-2214641
          Length = 1093

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -3

Query: 680 VWHAFQGPKIEPSLILC*VFENMRTAVYRQSGSERFAFAWMTA*VLLESCEYSLRL 513
           VW      +  P++I   +F  MR  VY+ +   R AF+     +LLE+ EY L L
Sbjct: 101 VWSIDSLGRTNPAIIRAFLFRKMRKKVYKSNIILRNAFS-----MLLETAEYLLNL 151


>09_02_0411 + 8721855-8722232
          Length = 125

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 406 RRKSVRKEGGSETESFGNGGRK 341
           R+K  R++GG   ES G GGR+
Sbjct: 75  RKKGEREKGGRRRESTGGGGRR 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,973,926
Number of Sequences: 37544
Number of extensions: 552931
Number of successful extensions: 1530
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)