Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120437.Seq
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)                       30   2.1  
SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)                   30   2.1  
SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)                     29   3.7  
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     29   4.9  
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.9  
SB_52214| Best HMM Match : Alpha_E3_glycop (HMM E-Value=5.1)           28   6.4  
SB_47977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_35653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_57836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_49572| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_25708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_17857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_8008| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)                    28   6.4  
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRFRPSFL 388
           G + N F  ++ ++R+ PKP+S    + D++Y   L +   A ++  +  FL
Sbjct: 363 GGYDNGFRSTVMILRLGPKPLSATKAR-DARYILVLRALMAASKIVVKHEFL 413


>SB_40607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 65  PLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 157
           P +  I ++ PT + I++  PTD +IE  YP
Sbjct: 97  PNYLSIVTAYPTDLSIATAYPTDLSIETAYP 127



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 56  TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 157
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 214 TANPNDLSIVTAYPTDLRIVTAYPTDLSIETAYP 247


>SB_47252| Best HMM Match : TP2 (HMM E-Value=9.6)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 56  TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 157
           T  P    I ++ PT + I +  PTD +IE  YP
Sbjct: 44  TAYPTDLSIATAYPTDLSIVTAYPTDLSIETAYP 77



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 56  TRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYP 157
           T  P +  I ++ PT + I++  PTD +I   YP
Sbjct: 34  TAYPNYLSIVTAYPTDLSIATAYPTDLSIVTAYP 67


>SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRL 367
           G + N F  ++ ++R+ PKP+S    + D++Y   L+  ++ KRL
Sbjct: 99  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY--ILVLRALEKRL 140


>SB_5683| Best HMM Match : SAND (HMM E-Value=0.073)
          Length = 311

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 263 STHEIDWRTPPCGGF 219
           +T+E+D R PPCGGF
Sbjct: 278 NTNEMDKRAPPCGGF 292


>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 281 APKPISVIAPKHDSKYDPTLLSASI---AKRLRFRPSFLPYRLSPSDEVLGT 427
           A +P S  AP    K D T L A +   A R R  PSF P  LSP    L T
Sbjct: 98  AAEPAS--APGPGEKGDHTALKAGLSELAPRARSSPSFFPMALSPIPTPLAT 147


>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2429

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 500  FVEVSISMSTHSFPTRLKLSSKRTQIVRIPTGGTLLSAYFQ 622
            F++ S++ S     T +       Q+  IPTGG  LS YF+
Sbjct: 1093 FLKPSVNGSMQFHTTNVTSKDVTIQVTLIPTGGKELSVYFR 1133


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 455 RLDIEMKTKMCQGLRQKEKVCKEGRRVGNGVFWQ 354
           R D+E    +C  + ++EK+ +E  RV   VFWQ
Sbjct: 677 RCDLERLRNLCYMVGKREKMRRELFRVRERVFWQ 710


>SB_52214| Best HMM Match : Alpha_E3_glycop (HMM E-Value=5.1)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 425 TFLFSSLCRAYKRHPNHKVPFQPDLFVEVSISMSTHSFPTRLKLSSKRTQIVR 583
           T+ FS +     R P  +VPFQ D F  +  S      PT   L    TQ+V+
Sbjct: 179 TYEFSDIDTTEDR-PKKRVPFQQDYFTLMDFSAKWDPIPT--MLCQNHTQLVK 228


>SB_47977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 16  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 46


>SB_35653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 16  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 46


>SB_57836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKYDPTLLSASIAKRLRF 373
           G + N F  ++ ++R+ PKP+S    + D++Y   LL A +A+   F
Sbjct: 274 GGYYNGFRSTVMILRLGPKPLSANKAR-DARY-ILLLRALLAEMAAF 318


>SB_49572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 16  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 46


>SB_25708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 16  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 46


>SB_17857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 16  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 46


>SB_8008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 25  GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 55


>SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16)
          Length = 343

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 233 GEFSNQFHGSISLMRMAPKPISVIAPKHDSKY 328
           G + N F  ++ ++R+ PKP+S    + D++Y
Sbjct: 306 GGYDNGFRSTVMILRLGPKPLSATKAR-DARY 336


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 206 PDSLEIRHKGEFSNQFHGSISL 271
           PD  E++H  EFS + HGS SL
Sbjct: 278 PDHTEVKH--EFSGELHGSFSL 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,439,162
Number of Sequences: 59808
Number of extensions: 587042
Number of successful extensions: 1656
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)