Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120437.Seq
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13210.1 68418.m01516 expressed protein 29 2.3
At5g18930.1 68418.m02248 adenosylmethionine decarboxylase family... 29 4.0
At4g12940.1 68417.m02023 expressed protein hypothetical protein ... 29 4.0
At2g35240.1 68415.m04323 plastid developmental protein DAG, puta... 29 4.0
At1g51190.1 68414.m05758 ovule development protein, putative sim... 29 4.0
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 29 4.0
At5g43130.1 68418.m05265 transcription initiation factor IID (TF... 28 5.2
At4g27010.1 68417.m03885 expressed protein ; expression support... 28 6.9
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 28 6.9
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 28 6.9
At1g32580.1 68414.m04020 plastid developmental protein DAG, puta... 28 6.9
At5g61520.1 68418.m07719 hexose transporter, putative similar to... 27 9.2
At4g27860.1 68417.m04000 integral membrane family protein contai... 27 9.2
At3g07530.1 68416.m00899 expressed protein ; expression supporte... 27 9.2
At2g33430.1 68415.m04097 plastid developmental protein DAG, puta... 27 9.2
>At5g13210.1 68418.m01516 expressed protein
Length = 673
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = +2
Query: 203 DPDS--LEIRHKGEFSNQFHGSISLMRM-APKPISVIA---PKHDSKYDP-TLLSASIAK 361
DPD L R F+NQ + + P IS+ A P DS +D TLL SIA+
Sbjct: 259 DPDYRYLHERVSDLFANQLKKDLEFLTSDKPNEISLAAKWCPSLDSSFDKATLLCESIAR 318
Query: 362 RLRFRPSFLPY 394
++ R SF Y
Sbjct: 319 KIFTRESFPEY 329
>At5g18930.1 68418.m02248 adenosylmethionine decarboxylase family
protein contains Pfam profile: PF01536
adenosylmethionine decarboxylase
Length = 347
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 71 HFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEPRDPDSLEIRHKGEFSNQ 250
H DI L +D+ P+D +I Y G DY +E L+++ + ++
Sbjct: 273 HEDISEVLSRAIDV--FRPSDVSIATTYGGEDYNHEVTKRVERVLAKKLDLKCRSRLMDE 330
Query: 251 FHGS 262
F GS
Sbjct: 331 FPGS 334
>At4g12940.1 68417.m02023 expressed protein hypothetical protein -
Arabidopsis thaliana,PIR2:T08948; expression supported
by MPSS
Length = 151
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 338 LLSASIAKRLRFRPSFLPYRLSPSDEVLGTFLFSSLCRAYKRHPNHKVPFQPDL 499
L+ +SIAK+ +P + S+ +F F + ++R N K PF+PDL
Sbjct: 17 LIESSIAKQ---KPDLDHVNVDMSEIDYSSF-FKQMIEGWEREANEKYPFRPDL 66
>At2g35240.1 68415.m04323 plastid developmental protein DAG,
putative similar to plastid protein [Arabidopsis
thaliana] gi|2246378|emb|CAB06698
Length = 232
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 23 IPRLDTHHLPETRRPLHFDIPSSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEP 199
IP L TR S L + + S PT+ A P++PGCDY+ +M +P
Sbjct: 50 IPALTRFTTIRTRMDRSGGSYSPLKSGSNFSDRPPTEMA--PLFPGCDYEHWLIVMEKP 106
>At1g51190.1 68414.m05758 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099) [Arabidopsis thaliana]
Length = 568
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 244 GELPLVADFKGVGVPGFHH 188
GE+P VADF GV G HH
Sbjct: 61 GEVPKVADFLGVSKSGDHH 79
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 360 LAMEAESKVGSYFESCLGAITLMGLGAILIREI 262
LA + K+GS+FE C G+ T + L +I +I
Sbjct: 321 LAKNIQEKIGSHFERCFGSETHLELDKEVILQI 353
>At5g43130.1 68418.m05265 transcription initiation factor IID
(TFIID) component TAF4 family protein weak similarity to
SP|O00268 Transcription initiation factor TFIID 135 kDa
subunit {Homo sapiens}; contains Pfam profile PF05236:
Transcription initiation factor TFIID component TAF4
family
Length = 712
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 422 GTFLFSSLCRAYKRHPNHKVPFQPDLFVEVSISMSTHSFP 541
GT S + +HP H++ P F + S S HSFP
Sbjct: 180 GTLGSSVPVQGLTKHPQHQMQHPPSSFPMYTTSGSFHSFP 219
>At4g27010.1 68417.m03885 expressed protein ; expression supported by
MPSS
Length = 2535
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 435 FHLYVEPINDIPIIKFLF 488
F+LY +PIN++P+ F F
Sbjct: 1927 FYLYDDPINEVPVFSFNF 1944
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 331 PDFTFGLHCQKTPFPTLLPSLQTFS 405
PD T L +TPFP +P +++FS
Sbjct: 848 PDVTQNLPVSRTPFPARVPVVKSFS 872
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 83 PSSLPTKVDISSVEPTDTAIEPVYPGCD-YKTVAALMME 196
P +PT D++S P+ ++P YP + + +AA M++
Sbjct: 37 PFKIPTLPDLTSPVPSPVKLKPTYPNLNLLQKLAATMLD 75
>At1g32580.1 68414.m04020 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 229
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 86 SSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEP 199
S L + + S PT+ A P++PGCDY+ +M +P
Sbjct: 68 SPLKSGSNFSDRAPTEMA--PLFPGCDYEHWLIVMDKP 103
>At5g61520.1 68418.m07719 hexose transporter, putative similar to
hexose carrier protein hex6 {Ricinus communis}
SP|Q07423; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 514
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 160 AGIDRFYGGVCRFNTTNVHFGRERGRNIEMERTTGFWK 47
AGI FYGG T V +N+ +E+ G W+
Sbjct: 455 AGIFFFYGGWLVVMTVAVQLFLPETKNVPIEKVVGLWE 492
>At4g27860.1 68417.m04000 integral membrane family protein contains
Pfam PF01988: Integral membrane protein
Length = 611
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 508 SINLNEYSQLSNKTQAVIQANANRSDPDWRYTAVRIFSKTQHK 636
S++ N+YS+ T+ V++A +++PD V I K QHK
Sbjct: 63 SVDKNQYSE----TEVVVRAKDLQTEPDSLDDDVEIVIKNQHK 101
>At3g07530.1 68416.m00899 expressed protein ; expression supported
by MPSS
Length = 699
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 497 GRAEKELYDWDVVYRLD-IEMKTKMCQGLRQKEKVCKEG 384
G + +L W +Y LD IE K QG++ E+VC G
Sbjct: 187 GESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNG 225
>At2g33430.1 68415.m04097 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 219
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 86 SSLPTKVDISSVEPTDTAIEPVYPGCDYKTVAALMMEP 199
S L + + S PT+ A P++PGCDY+ +M +P
Sbjct: 59 SPLNSGSNFSDRPPTEMA--PLFPGCDYEHWLIVMDKP 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,244,149
Number of Sequences: 28952
Number of extensions: 424790
Number of successful extensions: 1172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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