Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120436X.Seq
(423 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 75 6e-13
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 45 6e-04
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 40 0.028
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 40 0.028
UniRef50_A3L9S5 Cluster: Putative uncharacterized protein; n=1; ... 36 0.34
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 35 0.60
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 35 0.60
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 34 1.4
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 33 2.4
UniRef50_Q0JKB1 Cluster: Os01g0686100 protein; n=1; Oryza sativa... 33 3.2
UniRef50_Q38BM7 Cluster: Putative uncharacterized protein; n=1; ... 31 7.4
UniRef50_Q4S5N1 Cluster: Chromosome 9 SCAF14729, whole genome sh... 31 9.7
UniRef50_Q6BT52 Cluster: Similar to CA4960|IPF3912 Candida albic... 31 9.7
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 31 9.7
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 74.9 bits (176), Expect = 6e-13
Identities = 34/37 (91%), Positives = 35/37 (94%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQVNSKLM 149
ANTIHRDAITAPLVE AI NFRHKLQLYPYQVNSKL+
Sbjct: 11 ANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 62.5 bits (145), Expect = 3e-09
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = +2
Query: 254 TAPLVETAISNFRHKLQLYPYQVNSKLM*NLNPL 355
TAPLVETAISNFRHKLQLYPYQVNSKL+ LN L
Sbjct: 20 TAPLVETAISNFRHKLQLYPYQVNSKLIPLLNQL 53
Score = 40.7 bits (91), Expect = 0.012
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +3
Query: 366 MAFTNLVDTLANTIHRDA 419
MAFTNLVDTLANTIHRDA
Sbjct: 1 MAFTNLVDTLANTIHRDA 18
Score = 40.7 bits (91), Expect = 0.012
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +3
Query: 204 FTNLVDTLANTIHRDAIRLP 263
FTNLVDTLANTIHRDAI P
Sbjct: 3 FTNLVDTLANTIHRDAITAP 22
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 45.2 bits (102), Expect = 6e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 45 TIHRDAITAPLVEAAIGNFRHKLQLYPYQV 134
T+HRD + +PLVEAA G R LQLYPY +
Sbjct: 144 TVHRDTVCSPLVEAAAGPLRDSLQLYPYDI 173
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 39.5 bits (88), Expect = 0.028
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQVNSK 143
++T+HRD + APL+E+ R L+LYP+ +N++
Sbjct: 11 SSTVHRDTVAAPLLESIAQPLRDSLELYPWAINAE 45
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 39.5 bits (88), Expect = 0.028
Identities = 14/37 (37%), Positives = 28/37 (75%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQVNSKLM 149
++T HRD+I+APL+++++ + L+L+PY V +L+
Sbjct: 11 SSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKELV 47
Score = 31.5 bits (68), Expect = 7.4
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +2
Query: 254 TAPLVETAISNFRHKLQLYPYQVNSKLM*NLN 349
+APL+++++S + L+L+PY V +L+ LN
Sbjct: 20 SAPLLDSSVSQLQSSLELFPYTVPKELVPQLN 51
>UniRef50_A3L9S5 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas aeruginosa 2192|Rep: Putative
uncharacterized protein - Pseudomonas aeruginosa 2192
Length = 847
Score = 35.9 bits (79), Expect = 0.34
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 2 ACPWL---LRLAWLSRQHHPPRRHNGSPGGSRYRQFPSQASTL 121
A PWL LRL WL R PP R + G + YRQ P +A+ L
Sbjct: 483 ALPWLGRPLRLGWLCRPDPPPVRPGPAAGLAGYRQPPHRAARL 525
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 35.1 bits (77), Expect = 0.60
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 45 TIHRDAITAPLVEAAIGNFRHKLQLYPYQV 134
T HRD ITAP+VE+ R L+ YP+ +
Sbjct: 20 TTHRDTITAPIVESLATPLRRSLERYPWSI 49
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 35.1 bits (77), Expect = 0.60
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQVNSKL 146
A T HRD I PL+EA +R L YP+ + + L
Sbjct: 99 APTTHRDTIATPLMEALAEPYRQSLSTYPWHIPTNL 134
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 33.9 bits (74), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQV 134
++TIHRD I APL+E +R L+ +P+ V
Sbjct: 32 SSTIHRDTIAAPLMETLASPYRDSLRDFPWAV 63
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 33.1 bits (72), Expect = 2.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 39 ANTIHRDAITAPLVEAAIGNFRHKLQLYPYQVNSKLM 149
A T HRD P++E+ + + R +Q YP+ + +L+
Sbjct: 11 APTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKELL 47
>UniRef50_Q0JKB1 Cluster: Os01g0686100 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os01g0686100 protein -
Oryza sativa subsp. japonica (Rice)
Length = 122
Score = 32.7 bits (71), Expect = 3.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 2 ACPWLLRLAWLSRQHHPPRRHNGSPGGSRYRQFPSQASTLPIS 130
A P LA R+ PPR +PGGS +R+ P Q +P+S
Sbjct: 10 AIPRSALLASSRRRRTPPRPAPPAPGGSPFRRSPRQRRVVPLS 52
>UniRef50_Q38BM7 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 508
Score = 31.5 bits (68), Expect = 7.4
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 29 WLSRQHHPPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDINNHQSQLVP 181
+LS H P+R NGSPG S FP +T+P + I ++ + P
Sbjct: 244 YLSYNHTAPQRSNGSPGCST-ASFPECGTTIPSFVEVGGKRIARYRESVAP 293
>UniRef50_Q4S5N1 Cluster: Chromosome 9 SCAF14729, whole genome
shotgun sequence; n=2; Euteleostomi|Rep: Chromosome 9
SCAF14729, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 823
Score = 31.1 bits (67), Expect = 9.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 81 PPGEPLWRLGGWCWRESHAKRRSQGQA 1
PPGEPLW CW + +RR G++
Sbjct: 562 PPGEPLWDRRACCW-TARTRRRGPGRS 587
>UniRef50_Q6BT52 Cluster: Similar to CA4960|IPF3912 Candida albicans
IPF3912; n=1; Debaryomyces hansenii|Rep: Similar to
CA4960|IPF3912 Candida albicans IPF3912 - Debaryomyces
hansenii (Yeast) (Torulaspora hansenii)
Length = 247
Score = 31.1 bits (67), Expect = 9.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 253 YGSPSGNRHQQFPSQASTLPISGKFQAHVKS 345
YG+P+ RH+ S+AS LP++G H KS
Sbjct: 131 YGAPTHERHRAVSSEAS-LPVAGVVPTHFKS 160
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 31.1 bits (67), Expect = 9.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 42 NTIHRDAITAPLVEAAIGNFRHKLQLYPY 128
+T HRDA T P++ + + R L LYP+
Sbjct: 12 STTHRDASTNPILNSVVEPLRDSLSLYPW 40
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,160,705
Number of Sequences: 1657284
Number of extensions: 7810008
Number of successful extensions: 19586
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19582
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -