Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   2.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   2.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   6.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    20   8.6  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    20   8.6  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 50  PPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDINNHQSQ 172
           P    + SP GS  +   S AST P +  +      +H  Q
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQ 72



 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 259 SPSGNRHQQFPSQASTLP 312
           SPSG+  Q   S AST P
Sbjct: 39  SPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 50  PPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDINNHQSQ 172
           P    + SP GS  +   S AST P +  +      +H  Q
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQ 72



 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 259 SPSGNRHQQFPSQASTLP 312
           SPSG+  Q   S AST P
Sbjct: 39  SPSGSSPQHSSSSASTSP 56


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 86  RYRQFPSQASTLPISGKFQAHDI 154
           R+R   S AS  P     Q HD+
Sbjct: 345 RFRMINSFASVCPAQLTIQGHDL 367


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 86  RYRQFPSQASTLPISGKFQAHDI 154
           R+R   S AS  P     Q HD+
Sbjct: 345 RFRMINSFASVCPAQLTIQGHDL 367


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 38  RQHHPPRRHNGSPGGSR 88
           RQ  PP  + G P G +
Sbjct: 57  RQGIPPHHYGGPPSGGQ 73


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 40  PTPSTETP*RLPWWKPLS 93
           P PS E P     WKP++
Sbjct: 477 PNPSEENPLINVTWKPVT 494


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,414
Number of Sequences: 336
Number of extensions: 1998
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)