Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.30 
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   2.8  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.8  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    24   8.5  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    24   8.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   8.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -3

Query: 343  ILHELGIYLIWVKLKLVTEIAD---GGFH*GSRMASRWMVLARVSTKLVKAMLSAEARDK 173
            I H L + ++W  + + T + D     F+  ++M   WM      TKL+++ L  ++ +K
Sbjct: 2343 IRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMFTLTEKTKLLESFLPKDSLEK 2402

Query: 172  LT 167
             +
Sbjct: 2403 FS 2404


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 217 TKLVKAMLSAEARDKLTLMVVY 152
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 291 VTSFNFTHIR*IPSSCKILIPYSSSMAFTNLV 386
           +TSF+F H++ I  S     PY  ++ F  LV
Sbjct: 67  MTSFDFDHVQQILLSAVQPYPYDKNLMFVYLV 98


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 222 TLANTIHRDAIRLP*WKPPSAISVTS 299
           TLAN + +D +  P W P  + S T+
Sbjct: 286 TLANVLAKDEVGSPTWSPTPSKSSTN 311


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 47  HPPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDINNHQSQLVPGFCA*HG 202
           H   R NGS G S  R    Q++ +P      A  +NN  SQ +   C  +G
Sbjct: 184 HFGSRQNGSVGLSNERTILLQSAFMPAKACLCASILNN-SSQYINDACFNYG 234


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 267 WKPPSAISVTSFNFTHIR*IPSSCKILIPY 356
           WK P  I+ T+F F   +  PSS  ++  Y
Sbjct: 121 WKCPLTINTTTFKFLTRKNNPSSMSLVSNY 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,088
Number of Sequences: 5004
Number of extensions: 29936
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)