Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    27   8.2  
06_01_0069 + 579757-580004,580579-580675                               27   8.2  
03_06_0746 + 35961431-35961488,35963941-35964021,35964650-359647...    27   8.2  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    27   8.2  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 84  LPPGEPLWRLGGWCWRESHAKRR 16
           LPPGE + R GG C    H  RR
Sbjct: 777 LPPGEIIVRDGGGCGGVEHGDRR 799


>06_01_0069 + 579757-580004,580579-580675
          Length = 114

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 129 DMGKVEACDGNCR*RLPPGEPLWRLGGWCW 40
           D  +V A     R RLPPGE  W + G  W
Sbjct: 33  DWVRVAALGAERRSRLPPGEMGWPMVGSMW 62


>03_06_0746 +
           35961431-35961488,35963941-35964021,35964650-35964713,
           35965538-35966216
          Length = 293

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 141 WNLPDMGKVEACDGNCR*RLPPGEPLWRLGGWCWRESHAKRRSQG 7
           + +PD G   A  G+CR    P +     GGW  +   A+RRS G
Sbjct: 177 FTVPDDGASGAAGGSCRSGADPAD-----GGWAPQIVAARRRSGG 216


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
 Frame = +2

Query: 41  QHHPPRRHNGSPGGSRYRQFPSQ--------ASTLPISGKFQAHDINNHQSQLVPGFCA 193
           QH PP +  G  GG  YR  P Q        AS+  I G + AH  +    Q  P + A
Sbjct: 16  QHPPPPQAGGGGGGEFYRGPPPQPPMRQLSAASSTNIPGDYAAHQGHPPPQQNQPPYDA 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,732,866
Number of Sequences: 37544
Number of extensions: 229171
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)