Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   27   4.8  
SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)                  27   4.8  
SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13)                 27   6.4  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)                 27   8.5  

>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 26  AWLSRQHHPPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDI 154
           A LS    PP++++G+P  S      S +S+   SG    H +
Sbjct: 388 ALLSSPRTPPQQYSGTPHSSLQGSRTSYSSSTSFSGNSSTHSV 430


>SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)
          Length = 542

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L+  H+P  RH   PG +
Sbjct: 115 CDYAIRLVCLNNLHNPDTRHPSVPGNT 141



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L+  H+P  RH   PG +
Sbjct: 265 CDYAIRLVCLNNLHNPDTRHPSVPGNT 291



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L+  H+P  RH   PG +
Sbjct: 355 CDYAIRLVCLNNLHNPDTRHPSVPGNT 381



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 25  CDYAIRLVCLHNLHNPDTRHPSVPGNT 51



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 55  CDYAIRLVCLHNLHNPDTRHPSIPGNT 81



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 85  CDYAIRLVCLHNLHNPDTRHPSIPGNT 111



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 175 CDYAIRLVCLHNLHNPDTRHPSIPGNT 201



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 205 CDYAIRLVCLHNLHNPDTRHPSVPGNT 231



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 235 CDYAIRLVCLHNLHNPDTRHPSIPGNT 261



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   CPWLLRLAWLSRQHHPPRRHNGSPGGS 85
           C + +RL  L   H+P  RH   PG +
Sbjct: 325 CDYAIRLVCLHNLHNPDTRHPSIPGNT 351


>SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13)
          Length = 475

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 343 ILHELGIYLIWVKLKL-VTEIADGGFH*GSRMASRWMVLARVSTKLVKAMLSAEARDKLT 167
           +LH  G+  I + L + +  I    FH G   A R +V    S+ L+ A+     R KLT
Sbjct: 26  VLHFFGLGSIPLYLPVFLRSIGIDAFHSGIITALRKLVRIP-SSPLIGAIADKSLRHKLT 84

Query: 166 LMVVYVM 146
           LMV  V+
Sbjct: 85  LMVCVVL 91


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 261 P*WKPPSAISVTSFNFT 311
           P W+PP A+ V +F+FT
Sbjct: 52  PDWQPPFAVDVENFHFT 68


>SB_10744| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-22)
          Length = 276

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +3

Query: 348 IPYSSSMAFTNLVDTLANTI 407
           I Y++S+ FT+L+ T+ANT+
Sbjct: 7   ISYTASVLFTSLLSTVANTL 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,374
Number of Sequences: 59808
Number of extensions: 229743
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)