BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120436X.Seq (423 letters) Database: mosquito 2352 sequences; 563,979 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DQ314781-1|ABC54566.1| 407|Anopheles gambiae OSKAR protein. 27 0.21 AF510719-1|AAP47148.1| 591|Anopheles gambiae ammonium transport... 24 2.0 AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript... 24 2.6 AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering In... 23 3.5 AY725819-1|AAU50567.1| 569|Anopheles gambiae fruitless male-spe... 23 4.6 AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 23 4.6 AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p... 22 8.0 >DQ314781-1|ABC54566.1| 407|Anopheles gambiae OSKAR protein. Length = 407 Score = 27.5 bits (58), Expect = 0.21 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +2 Query: 56 RRHNGSPGGSRYRQFPSQASTLPIS 130 R G PGGS YR++ +A+ P++ Sbjct: 100 RSPRGGPGGSNYRRYMPRATGAPVN 124 >AF510719-1|AAP47148.1| 591|Anopheles gambiae ammonium transport-like protein protein. Length = 591 Score = 24.2 bits (50), Expect = 2.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +2 Query: 101 PSQASTLPISGKFQAHDINNHQSQLVPG 184 P AST P G FQ+ NN S ++PG Sbjct: 10 PGAASTTPSPGAFQSLARNN--SYVIPG 35 >AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase protein. Length = 1009 Score = 23.8 bits (49), Expect = 2.6 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%) Frame = +3 Query: 15 FCA*HGFHANTIHRDAIT-APLVEA 86 F + HGF+A +HR +T +PL +A Sbjct: 892 FLSSHGFYAYQLHRMQLTGSPLCDA 916 >AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering Institute proto-oncogeneproduct protein. Length = 358 Score = 23.4 bits (48), Expect = 3.5 Identities = 11/31 (35%), Positives = 13/31 (41%) Frame = +2 Query: 32 LSRQHHPPRRHNGSPGGSRYRQFPSQASTLP 124 L+ QHH H G P G + S LP Sbjct: 58 LASQHHALSHHAGEPSGGGGGRAGSDEDELP 88 >AY725819-1|AAU50567.1| 569|Anopheles gambiae fruitless male-specific zinc-fingerC isoform protein. Length = 569 Score = 23.0 bits (47), Expect = 4.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 139 PSS*HKQPSKSACPWLLRLA 198 PSS H+QPS+SA L++ A Sbjct: 271 PSSQHQQPSRSASIDLMQSA 290 >AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. Length = 1229 Score = 23.0 bits (47), Expect = 4.6 Identities = 12/37 (32%), Positives = 17/37 (45%) Frame = -3 Query: 286 IADGGFH*GSRMASRWMVLARVSTKLVKAMLSAEARD 176 I GG H +R A RW KL K ++ E ++ Sbjct: 664 IISGGSHDLARKAKRWDEKHMAQLKLQKEKITEELKE 700 >AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein protein. Length = 3325 Score = 22.2 bits (45), Expect = 8.0 Identities = 7/17 (41%), Positives = 11/17 (64%) Frame = -2 Query: 164 DGCLCHELGIYLIWVKL 114 DGC +E+ +IW+ L Sbjct: 1900 DGCAVYEVAYQVIWICL 1916 Database: mosquito Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 563,979 Number of sequences in database: 2352 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 420,306 Number of Sequences: 2352 Number of extensions: 7755 Number of successful extensions: 18 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 18 length of database: 563,979 effective HSP length: 58 effective length of database: 427,563 effective search space used: 35060166 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -