Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-P...    28   4.5  
BT003479-1|AAO39482.1|  937|Drosophila melanogaster RE59328p pro...    28   5.9  
AE014296-687|AAF47791.2|  937|Drosophila melanogaster CG32264-PA...    28   5.9  

>AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-PA
           protein.
          Length = 2938

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 38  RQHHPPRRHNGSPGGSRYRQFPSQASTLPISGKFQAHDINNHQSQLVPGFCA 193
           +QH  P++H  SP     +Q   Q  +   + + Q H    HQ Q+   + A
Sbjct: 304 QQHLMPQQHRPSPQQHSQQQQQQQQHSQQFAARQQQHQQQQHQQQVQQSYHA 355


>BT003479-1|AAO39482.1|  937|Drosophila melanogaster RE59328p
           protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 32  LSRQHHPPRRHNGSPGGSRYRQFPSQAS 115
           L   HHPP +H+ S GG +  Q   QA+
Sbjct: 55  LHHSHHPPLQHHLSLGGYQQLQLQMQAN 82


>AE014296-687|AAF47791.2|  937|Drosophila melanogaster CG32264-PA,
           isoform A protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 32  LSRQHHPPRRHNGSPGGSRYRQFPSQAS 115
           L   HHPP +H+ S GG +  Q   QA+
Sbjct: 55  LHHSHHPPLQHHLSLGGYQQLQLQMQAN 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,276
Number of Sequences: 53049
Number of extensions: 352751
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)