Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.3  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   7.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 68  GSPGGSRYRQFPSQASTLPISGKFQAHDI 154
           G P G+   Q PSQ    P SG  Q   +
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQL 77



 Score = 21.0 bits (42), Expect = 5.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 256 GSPSGNRHQQFPSQASTLPISGKFQ 330
           G P G    Q PSQ    P SG  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQ 73


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 74 GSRYGVSVDGVGVKAM 27
          G+ YG +  G G+ AM
Sbjct: 28 GAAYGTAKSGTGIAAM 43


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 29  WLSRQHHPPRRHNGSPGGS 85
           W+ +++    + +GSPGG+
Sbjct: 132 WVPQKYRLRHKGDGSPGGN 150


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 29  WLSRQHHPPRRHNGSPGGS 85
           W+ +++    + +GSPGG+
Sbjct: 132 WVPQKYRLRHKGDGSPGGN 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,101
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)