Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120436X.Seq
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67035.1 68414.m07623 expressed protein ; expression supporte...    29   0.98 
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   2.3  
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    27   6.9  

>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 119 KLKLVTEIADSGFHQGSRYG 60
           KLKL+ +  D GF +GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -3

Query: 409 WMVLARVSTKLVKAMLEE*GIKILHELGIYLIWVKLKLVTEIADGGFH*GSRMA 248
           W  L  V   +V ++  E  +K L    IYL W+    +    DGG H  +R A
Sbjct: 263 WRKLEMVREVIVGSVEREERLKALIYSAIYLKWINTGQIPCFEDGGHHRPNRHA 316


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 27  HGFHANTIHRDAITAPLVEAAIGN 98
           +GF  + I R AIT PLV+   GN
Sbjct: 215 YGFDMSCIKRRAITEPLVDTVDGN 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,024,146
Number of Sequences: 28952
Number of extensions: 171177
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)