Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120435X.Seq
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 45 9e-06
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 44 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 5e-05
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 5e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 42 6e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 41 1e-04
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 40 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 7e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 7e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 7e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 37 0.002
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.004
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 36 0.004
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 36 0.005
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.005
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 35 0.009
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.012
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.016
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.028
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 33 0.037
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.049
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 32 0.065
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 31 0.085
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.085
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.11
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.20
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.20
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.26
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.34
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.34
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.46
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.60
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.80
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 28 1.1
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 1.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 3.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 4.2
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 26 4.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.4
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 7.4
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 44.8 bits (101), Expect = 9e-06
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYG----------KLNSVWVALNPPGFAFIEFENLQEAED 174
+YVG L + DL F+ +G K N + +P FAFI FEN A++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 175 ACSAMNGTEMLGATLKVE 228
A +++NG+ G TLKVE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
Score = 32.7 bits (71), Expect = 0.037
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 61 EDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ LE F K+G++ S +A P G+ F+ F + EA A + +NG L V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 226 EISRKRD 246
+ KR+
Sbjct: 495 NYAEKRE 501
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 44.4 bits (100), Expect = 1e-05
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMN 192
+YV G +G++ +L EF+ +G L + + FAF+E+E+ ++AEDA ++
Sbjct: 9 LYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYEVH 68
Query: 193 G--TEMLGATLKVEISRKRDGPREVGSEVGAAVTSGVVVHSE 312
G E G L+VE + K+ P GS+ G G VH +
Sbjct: 69 GRRLERGGGVLRVEWA-KQPPPSGPGSKRGGRRERGGRVHGD 109
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 42.3 bits (95), Expect = 5e-05
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKK-EDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 186
R+ + L IKK + LE F K+GK+ + + G FAF+ ++ + AE+A ++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 187 MNGTEMLGATLKVEISRKRD 246
+NGTE+ G + V+ + +D
Sbjct: 168 LNGTEIDGRPIAVDWAVSKD 187
Score = 36.3 bits (80), Expect = 0.003
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEA 168
M+S T ++V L K++DL F G + V NP G+ F+ F L++A
Sbjct: 1 MNSNST-LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDA 59
Query: 169 EDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGAAV 285
+ A + ++ G L+++ + R EV ++ AV
Sbjct: 60 QRAAKELKNKKLHGRILRLDFATPRK-RSEVDTDQNKAV 97
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 42.3 bits (95), Expect = 5e-05
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
TR++VG + +ED+ F YG++ + +N GF F+E E+ ++A D + G
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL-MN--GFGFVEVEDARDARDIVNDFQGK 60
Query: 199 EMLGATLKVEISRKRDGPREVGSEVGAA 282
E +G+ + VE +R RE E A+
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAAS 88
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
G R+ V L E + +DL+ K G+ PG +EF ++ +A +++NG
Sbjct: 97 GFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNG 156
Query: 196 TEMLG 210
+ G
Sbjct: 157 EVIKG 161
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 41.9 bits (94), Expect = 6e-05
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
+++ L K+ D+EREF +YG + + V N G+AF+ FE ++ + A A
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 190 NGTEMLGATLKVEISRKRDG----PREVGSEVG 276
G + G + V++ R R PR++G +G
Sbjct: 162 AGLMLNGRRIVVDVERGRTVKGWLPRKLGGGLG 194
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACS 183
GT++ + L K+D++ YG+L SV V + GFAF EF +EA +A
Sbjct: 720 GTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMR 779
Query: 184 AMNGTEMLGATLKVE 228
A+ T +LG L ++
Sbjct: 780 ALKNTHLLGRHLVLQ 794
Score = 34.7 bits (76), Expect = 0.009
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSA 186
R+++ L ++DL+ F +G+L V + + NP GFA+I+F + +A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 187 MNGTEMLGATLKVEISRKR 243
++ G L V ++ R
Sbjct: 384 LDAKPFQGRLLHVLPAKAR 402
Score = 32.3 bits (70), Expect = 0.049
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKY-GKLNSVWVALNPP---------GFAFIEFENLQEAED 174
+YV L K+E+ ++ F G L++V A P GF F+EF++ A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 175 ACSAMNGTEMLGATLKVEISRK 240
A AMNG + G L++++S +
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQ 702
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 133 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 246
FAFI F+N ++A+ A +N + + T ++E+ R D
Sbjct: 48 FAFIGFKNEEDADKAIRYLNKSYV--ETSRIEVHRALD 83
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV--ALNPPG----FAFIEFENLQEAEDAC- 180
R+YVGGL I+ DLE F ++G ++++ + P G FA++ F ++ C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 181 SAMNGTEMLGATLKVEISR 237
S ++ G+ L++E +R
Sbjct: 66 SYLSNATFKGSKLRIEEAR 84
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 7e-04
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +1
Query: 58 KEDLEREFD-KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 234
++D++ E D KYGK+ + V N G F++FEN AE A + ++ G T+K I
Sbjct: 530 EQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASIL 589
Query: 235 RKRD 246
+ D
Sbjct: 590 PETD 593
Score = 33.1 bits (72), Expect = 0.028
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 189
R+ V + + ED++ F+ +G + V + + GF +I++ N A +A M
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 190 NGTEMLGATLKV 225
NG ++ G ++V
Sbjct: 401 NGFDLAGRNMRV 412
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.3 bits (85), Expect = 7e-04
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEA 168
+S V+VG L ++DL F G + S+ + +P GF ++ F ++ A
Sbjct: 361 LSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSA 420
Query: 169 EDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVG 276
+ C MNG + G +++ S R G G G
Sbjct: 421 K-KCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRGG 455
Score = 35.1 bits (77), Expect = 0.007
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
V+VG L + + L +EF++YG + V ++ G+ +++FE EA A A
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAA 323
Query: 190 NGT-EMLGATLKVEISRKR 243
NGT E+ G + +++S R
Sbjct: 324 NGTKEIDGRMVNLDLSNPR 342
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 7e-04
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDAC 180
+M T V+VGGL + ++DL+ F +G++ ++ + G F+++ AE A
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG-KGCGFVQYSEKSAAEKAI 349
Query: 181 SAMNG 195
+ M G
Sbjct: 350 NTMQG 354
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.7 bits (81), Expect = 0.002
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
VYVG L +E + F K G++ + + ++ P GF F+E+ Q+A D+ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 190 NGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSGVVVHSEVREE 324
+ T + ++ ++ + R+ G GA SG V E+REE
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGR--GA---SGGQVRDEMREE 133
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.9 bits (79), Expect = 0.004
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSA 186
G +YV + + ++D+E F YG++ SV + GF ++ Q+AE+A SA
Sbjct: 756 GRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSA 815
Query: 187 MNGTEMLGATLKVEISRKRD 246
G ++ L V +S+ R+
Sbjct: 816 A-GKQLGNRVLNVVLSKPRE 834
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 35.9 bits (79), Expect = 0.004
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 25 VYVGGLVEGIK----KEDLEREFDKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSA 186
+Y+ + E I+ K LE F YGK+ V L G AF+ F+NL+ A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 187 MNGTEMLGATLKVEISRKR 243
+ G + G + ++ S+ +
Sbjct: 88 LQGYPLYGKPMMIQYSKSK 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEA 168
++ V++G L ++++E F K+GK+ + + L+ AF+ F N+++A
Sbjct: 295 TAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI-LSKKNIAFVHFLNIRDA 347
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVA---------LNPPGFAFIEFENLQEAED 174
RV+VG L KK ++ F+ G + V + L P G AF+ F N ++ +
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 175 ACSAMNGTEMLGATLKVEISR 237
A +NG + + V+ +R
Sbjct: 105 AIETLNGKTLDDREIVVQKAR 125
Score = 29.1 bits (62), Expect = 0.46
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 17/85 (20%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNS-VWVALNPP----------------GFAFIEFE 153
+YV GL + E L+ FD Y + + V PP GF F+ F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 154 NLQEAEDACSAMNGTEMLGATLKVE 228
N ++ A MNG ++ TL V+
Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 34.7 bits (76), Expect = 0.009
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
VYVG + + E+L+ F G +N V + + P GFA+IEF +A +
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LL 115
Query: 190 NGTEMLGATLKVEISR 237
NG+ + LKV R
Sbjct: 116 NGSMLHERPLKVTPKR 131
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.3 bits (75), Expect = 0.012
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 189
+YVG L + + L F+ G + S+ V + G+A++ F N+++ E A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 190 NGTEMLGATLKVEISRKRDGPREVGS 267
N T + G ++ S++ R++G+
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGT 167
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.9 bits (74), Expect = 0.016
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGT 198
+++ L I E++ F +YG + + + + G AF+ +EN+Q+A AC ++G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 199 EMLGATLKV 225
+ L V
Sbjct: 74 NFMDRYLVV 82
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 33.1 bits (72), Expect = 0.028
Identities = 20/88 (22%), Positives = 37/88 (42%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
+YV L G + F YG + +W+ L+P A + +E+L A A A++ +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPDNSAIVSYESLSSAIVARDALHNRPV 60
Query: 205 LGATLKVEISRKRDGPREVGSEVGAAVT 288
V++ + + AAV+
Sbjct: 61 FENHGPVQVMLAKPSSNYEPGNITAAVS 88
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 32.7 bits (71), Expect = 0.037
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKL-NSVWVALNP----PGFAFIEFENLQEAEDAC 180
G ++VG L + + L F G+L + VA + G+ F+ +++ + A+ A
Sbjct: 98 GANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAI 157
Query: 181 SAMNGTEMLGATLKVEISRKRDGPRE 258
AMN ++ + V + KR+G E
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGKGE 183
Score = 31.1 bits (67), Expect = 0.11
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSG 294
GF F EF + Q+ E AC +N ++ G ++V + R V + +GA + G
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV---NRASQDRGVNTLIGANLFVG 104
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 32.3 bits (70), Expect = 0.049
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
++VG L G+ + F YG ++S+ + L+ AF+ F++++ A+ +NG +
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRM-LSHKHSAFLNFDSVETAKHVLEELNGKRI 647
Query: 205 LGATLKVEIS 234
+ V IS
Sbjct: 648 FFGSDPVCIS 657
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.9 bits (69), Expect = 0.065
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
+ +E L F YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 174 LSQERLYSIFRTYGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 31.5 bits (68), Expect = 0.085
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 58 KEDLEREFDKYGKL-NSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 231
K+D+ E +K G++ N V P G + F N +EAE M G G ++ I
Sbjct: 273 KDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASI 331
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.5 bits (68), Expect = 0.085
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
++Y+ L + ++ + +G L S + N GF F EF+N +AE A S
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 187 MNGTEMLGATLKVEIS 234
++G + G L + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
+YVG L G ++ + F ++G + + ++ N +AFIEFE+L A M
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 190 NGTEMLGATLKVEI 231
+ + G L+ ++
Sbjct: 167 HNYLLYGKLLQCKV 180
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.3 bits (65), Expect = 0.20
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 61 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
EDLE F ++GK+ S V + +AFIEF+N + E A M + + + V
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHV 317
Query: 226 EISR 237
+ S+
Sbjct: 318 DFSQ 321
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.20
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 174
+ G V+VG + + ++ + F++ G + + + L+P G+ F EF + +
Sbjct: 4 TAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAM 63
Query: 175 ACSAMNGTEMLGATLKVE 228
A +N +E+ ++VE
Sbjct: 64 AVRKLNNSELGPRKIRVE 81
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.26
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -1
Query: 113 TQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPPE 9
T+ +FPYL NSR+R S + P+ VPPE
Sbjct: 329 TEYRIAFPYLYNSRAR-SVALSEYHQPSNVFVPPE 362
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 192
+YVG L +L F G + +A P G F ++FEN +A + +N
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 193 GTEMLGATLKV 225
G G L++
Sbjct: 342 GYRYGGRPLQL 352
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 29.5 bits (63), Expect = 0.34
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 192
V+VG L + + L F +G++ SV + +AF+EF+ ++A++A MN
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 193 GTEMLGATLKV 225
+ + ++V
Sbjct: 68 YSILCDRCIRV 78
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.46
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = -1
Query: 257 SRGPSRFLEISTFKVAPNISVPFIALHASSASCK---FSNSMKAKPGGFSATQTEFSFPY 87
S G + IS+ + S P A +SS+S +S+ S+ + +S P
Sbjct: 754 SDGETSGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPI 813
Query: 86 LSNSRSRSSFLIPSTRPPTYTRVP 15
SNS + S+ +I S +YT +P
Sbjct: 814 SSNSVTSSTSIISSIASSSYTSIP 837
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.60
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
+++VGG+ +E+ F+++G++ + ++ P GF F+ +EN E S
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 0.80
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVW 111
+YVG + + E++ + F KYG++ S++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 127 PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSGVV 300
P E E LQE S +G + +VE++ K+D + + V AAV+ GV+
Sbjct: 387 PNLTEYEKEKLQERLAKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.5 bits (58), Expect = 1.4
Identities = 20/86 (23%), Positives = 32/86 (37%)
Frame = +1
Query: 58 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 237
K+ + K + S W+ LN + LQE ED +N T +
Sbjct: 175 KQAMTSSLSKVSVVTS-WILLNQANISSGLDIFLQECEDQLLILNDAREFSLTFLNTLKL 233
Query: 238 KRDGPREVGSEVGAAVTSGVVVHSEV 315
RD P E+ S + A+ + E+
Sbjct: 234 ARDFPNEIRSYLEASKNFNIFKEKEI 259
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 3.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-FAFIEFENLQEAEDACSAMNGTE 201
+YVG L +E+L+ F + G F+EFEN+ A +A + G
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQGV- 486
Query: 202 MLGATLK 222
L +++K
Sbjct: 487 CLSSSIK 493
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 209 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 42
P S F +L +S++S + S S + SA T S YLS+S SS PS+
Sbjct: 169 PLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +1
Query: 79 FDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 243
F KYGK+ + P FAF+ F++ Q A A + L+VE + R
Sbjct: 386 FSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYAAVCGKTRSPHQKKPLRVEFRQLR 442
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 58 KEDLEREFDKYGKLNSVWVAL 120
KE++E EF+ YGK + V VAL
Sbjct: 435 KEEVEIEFELYGKNDDVNVAL 455
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 7.4
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
G + V G+ +E +E F +G + ++ + L+ G+A IE+ L++A+ A
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 181 SAMNGTEMLGATLKVEIS 234
N +L L+V+ +
Sbjct: 69 DEKN-LSLLDEKLEVDFA 85
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 178 THLPPPASSQIL*KRNLGDLVLPKLSLVF 92
THL S L ++ L +LV+P ++L+F
Sbjct: 1156 THLQSEESESQLREKILANLVMPNITLIF 1184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,098
Number of Sequences: 5004
Number of extensions: 28004
Number of successful extensions: 154
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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