Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120435X.Seq
(551 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 68 5e-12
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 68 5e-12
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 65 3e-11
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 64 6e-11
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 59 2e-09
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 58 4e-09
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 58 4e-09
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 57 7e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 56 2e-08
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 54 6e-08
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 54 6e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 3e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 3e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 50 1e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 49 2e-06
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 49 2e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 48 4e-06
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 47 7e-06
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 47 7e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 47 7e-06
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 1e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 46 1e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 46 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 46 2e-05
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 46 2e-05
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 46 2e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 46 2e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 44 5e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 5e-05
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 7e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 7e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 44 9e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 44 9e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 44 9e-05
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 44 9e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 44 9e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 43 1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 1e-04
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 43 1e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 2e-04
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 42 4e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 4e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 42 4e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 42 4e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 41 5e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 6e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 6e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 41 6e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 41 6e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 41 6e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 41 6e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 41 6e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 40 8e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 40 8e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 40 8e-04
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 40 8e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 40 0.001
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 40 0.001
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 40 0.001
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 0.001
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 40 0.001
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 39 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.002
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 39 0.002
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 39 0.002
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 39 0.003
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.003
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 38 0.003
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 38 0.004
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 38 0.004
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 38 0.004
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.004
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 38 0.006
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 37 0.008
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 37 0.008
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.008
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.008
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.008
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 37 0.008
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 37 0.010
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 37 0.010
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 36 0.014
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.014
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.014
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.018
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 36 0.018
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.018
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.018
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 36 0.024
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 36 0.024
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.024
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.024
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 35 0.031
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 35 0.031
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 35 0.042
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 35 0.042
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 35 0.042
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 34 0.055
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 34 0.073
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.073
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 33 0.096
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 33 0.096
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 33 0.13
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 33 0.13
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 33 0.13
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 33 0.13
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 33 0.17
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.17
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 32 0.22
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.22
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 32 0.22
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 32 0.22
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.22
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 32 0.22
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 32 0.22
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 32 0.22
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 32 0.22
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 32 0.29
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 32 0.29
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 32 0.29
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 32 0.29
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 31 0.39
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 31 0.39
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 31 0.39
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 31 0.39
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.39
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 0.39
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 31 0.39
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.51
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 31 0.51
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.51
At5g51730.1 68418.m06415 expressed protein 31 0.68
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 31 0.68
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 31 0.68
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 31 0.68
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 30 0.89
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 30 0.89
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 30 1.2
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.2
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 30 1.2
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.2
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.2
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 29 1.6
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 1.6
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.6
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 1.6
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 1.6
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 29 1.6
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.1
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 2.7
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 29 2.7
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 29 2.7
At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,... 29 2.7
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 28 3.6
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 3.6
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa... 28 3.6
At1g79880.3 68414.m09332 La domain-containing protein contains P... 28 3.6
At1g79880.2 68414.m09331 La domain-containing protein contains P... 28 3.6
At1g79880.1 68414.m09333 La domain-containing protein contains P... 28 3.6
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 28 3.6
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 28 3.6
At1g05510.1 68414.m00563 expressed protein 28 3.6
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 28 4.8
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 4.8
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 28 4.8
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 28 4.8
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 28 4.8
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l... 28 4.8
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 27 6.3
At3g08670.1 68416.m01007 expressed protein 27 6.3
At1g72270.1 68414.m08355 expressed protein 27 6.3
At5g56180.2 68418.m07009 actin-related protein, putative (ARP8) ... 27 8.3
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 27 8.3
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 27 8.3
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 67.7 bits (158), Expect = 5e-12
Identities = 36/82 (43%), Positives = 51/82 (62%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 199 EMLGATLKVEISRKRDGPREVG 264
+VE+S K G R G
Sbjct: 62 N----GWRVELSHKDKGGRGGG 79
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 67.7 bits (158), Expect = 5e-12
Identities = 36/82 (43%), Positives = 51/82 (62%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
TRVYVG L + + +LE EF +G L +VWVA PPG+AF+EF++ ++A DA SA++
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 199 EMLGATLKVEISRKRDGPREVG 264
+VE+S K G R G
Sbjct: 62 N----GWRVELSHKDKGGRGGG 79
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 65.3 bits (152), Expect = 3e-11
Identities = 28/59 (47%), Positives = 42/59 (71%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA A++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 64.1 bits (149), Expect = 6e-11
Identities = 27/59 (45%), Positives = 41/59 (69%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
+RVYVG L + + +LE EF +G + SVWVA PPG+AF++FE+ ++A DA ++G
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS +R VYVG L I++ ++E F KYG + + + + PPG+AF+EF++ ++AED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VE++
Sbjct: 61 AIHGRDGYDFDGHRLRVELA 80
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS +R +YVG L I++ ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VE++
Sbjct: 61 AIYGRDGYDFDGHHLRVELA 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 57.2 bits (132), Expect = 7e-09
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +1
Query: 4 MSSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAED 174
MSS R +YVG L I+K ++E F KYG + + + + PPG+AF+EFE+ ++A+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 175 ACSAMNGTEMLGATLKVEIS 234
A +G + G L+VEI+
Sbjct: 61 AIYGRDGYDFDGCRLRVEIA 80
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 55.6 bits (128), Expect = 2e-08
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 192
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDADDARYYLD 65
Query: 193 GTEMLGATLKVEISRKRD-GPREVGS 267
G + G+ + VE SR G R+ GS
Sbjct: 66 GRDFDGSRITVEASRGAPRGSRDNGS 91
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 54.0 bits (124), Expect = 6e-08
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDACSAMNGT 198
+YVG L I++ ++E F KYG++ + + + PP + F+EFE+ ++AEDA +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 199 EMLGATLKVEIS 234
+ G L+VE++
Sbjct: 69 NLDGCRLRVELA 80
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 54.0 bits (124), Expect = 6e-08
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 192
G TR+YVG L + DLER F +YG++ V + + +AF+EF + ++A+DA ++
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDADDARHYLD 65
Query: 193 GTEMLGATLKVEISR 237
G + G+ + VE SR
Sbjct: 66 GRDFDGSRITVEFSR 80
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 183
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 184 AMNGTEMLGATLKVEISRKRDGPREV 261
M+G E+ + V + + G +V
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDV 97
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 51.6 bits (118), Expect = 3e-07
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACS 183
+R++VGGL + + LE FD+YGK+ + + P GF FI F + + A+DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 184 AMNGTEMLGATLKVEISRKRDGPREV 261
M+G E+ + V + + G +V
Sbjct: 72 HMHGRELGNKVISVNKAEPKVGGEDV 97
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
T ++VGGL + EDL++ F+++G++ SV + + G F++F N AE+A +NGT
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 362
Query: 199 EMLGATLKVEISR 237
+ T+++ R
Sbjct: 363 VIGKQTVRLSWGR 375
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/73 (32%), Positives = 43/73 (58%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
T ++VGGL + EDL++ F ++G++ SV + + G F++F N AE+A +NGT
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG-KGCGFVQFVNRPNAEEALEKLNGT 364
Query: 199 EMLGATLKVEISR 237
+ T+++ R
Sbjct: 365 VIGKQTVRLSWGR 377
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/76 (32%), Positives = 44/76 (57%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 189
S + ++VGGL + +EDL + F +G++ SV + + G F++F N Q AE+A +
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG-KGCGFVQFANRQSAEEAIGNL 382
Query: 190 NGTEMLGATLKVEISR 237
NGT + T+++ R
Sbjct: 383 NGTVIGKNTVRLSWGR 398
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/78 (34%), Positives = 45/78 (57%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
++VGG+ + K+DLE EF K+GK+ + L AFI++ + +A A +MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIED-FRFLRERKTAFIDYYEMDDALQA-KSMNGKPM 309
Query: 205 LGATLKVEISRKRDGPRE 258
G+ L+V+ R + +E
Sbjct: 310 GGSFLRVDFLRSQAPKKE 327
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
++VG L + DL F +YG ++ + V + GFAFI + +++EA A A+ G +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQGANL 78
Query: 205 LG 210
G
Sbjct: 79 NG 80
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 48.0 bits (109), Expect = 4e-06
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDA 177
S G +Y+ L + + E L+ F +YG + S V LNP GF F+ + N +EA A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRA 388
Query: 178 CSAMNGTEMLGATLKVEISRKRDGPR 255
S MNG + L + ++++++ R
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKEDRR 414
Score = 40.7 bits (91), Expect = 6e-04
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 186
T VYV L + I +++L + F K+G ++S V + G F F+ FE + A A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 187 MNGTEMLGATLKVEISRKRDGPRE 258
MNG + L V ++K+ E
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREE 312
Score = 33.5 bits (73), Expect = 0.096
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 168
T SG +++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 169 EDACSAMNGTEM 204
+ A +NG M
Sbjct: 190 QAAIDKLNGMLM 201
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPREVG 264
G+A+I F N +A A A+N T + +++ +S + R G
Sbjct: 90 GYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSG 134
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 47.2 bits (107), Expect = 7e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 226 EISRKRDGPREVG 264
E + K D R G
Sbjct: 163 EYAVKDDDSRGNG 175
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 201
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 202 -MLGATLKVEISRKRDG 249
G L+VE ++ G
Sbjct: 61 GRTGRRLRVEWTKNDRG 77
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 47.2 bits (107), Expect = 7e-06
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ + DLER F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 106 QNTRTRDLERHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDATNSSKLMDKVISV 162
Query: 226 EISRKRDGPREVG 264
E + K D R G
Sbjct: 163 EYAVKDDDSRGNG 175
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE- 201
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEY 60
Query: 202 -MLGATLKVEISRKRDG 249
G L+VE ++ G
Sbjct: 61 GRTGRRLRVEWTKNDRG 77
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 47.2 bits (107), Expect = 7e-06
Identities = 22/51 (43%), Positives = 31/51 (60%)
Frame = +1
Query: 58 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 210
KED++ E K+GKLN ++V N GF ++ FEN Q A A A++G G
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAG 538
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAED 174
S G R+YVG L + ++DL + F+ +G + V V + GF F++F L++A +
Sbjct: 281 SGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARN 340
Query: 175 ACSAMNGTEMLGATLKV 225
A + E+ G +KV
Sbjct: 341 ALNLNGQLEIAGRAIKV 357
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
G + V G+ E ++ED+ F +G++ ++ + L+ G+A IE+E +EA+ A
Sbjct: 94 GWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAI 153
Query: 181 SAMNGTEMLGATLKVE 228
SAMNG E+L + V+
Sbjct: 154 SAMNGAELLTQNVSVD 169
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/76 (30%), Positives = 44/76 (57%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM 189
S ++VGG+ + EDL + F ++G++ SV + + G F++F + + AEDA ++
Sbjct: 318 STNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESL 376
Query: 190 NGTEMLGATLKVEISR 237
NGT + T+++ R
Sbjct: 377 NGTVIGKNTVRLSWGR 392
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 181 SAMNGTEMLGATLKVEISRKRDG 249
+++ + + G + VE +R+R G
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRG 156
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 186
T VYV L E +DL+ F +YGK+ S V + GF F+ FEN +A A +
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 187 MNG 195
+NG
Sbjct: 89 LNG 91
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 66 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 122
Query: 226 EISRKRDGPREVG 264
E + K D R G
Sbjct: 123 EYAVKDDDARGNG 135
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ + DLE+ F+ YGK+ +V + N FAFI++E ++A A A N ++++ + V
Sbjct: 107 DNTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISV 163
Query: 226 EISRKRDGPREVG 264
E + K D R G
Sbjct: 164 EYAVKDDDARGNG 176
Score = 43.6 bits (98), Expect = 9e-05
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
V+ G ++ DLER F KYGK+ V + GFAF+ E+ ++AEDA A++ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEF 60
Query: 205 --LGATLKVEISR-KRDGPREVG 264
G L+VE ++ +R G + G
Sbjct: 61 GRKGRRLRVEWTKSERGGDKRSG 83
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
GT V V L + DLE F YG++ + N F+EF +++ A+ A A+N
Sbjct: 222 GTLV-VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 196 TEMLGATLKVEISR 237
TE+ G +K+E SR
Sbjct: 281 TEIAGKRIKLEHSR 294
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/68 (32%), Positives = 40/68 (58%)
Frame = +1
Query: 55 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 234
K+ D+E+ F+ YGK+ +V + N F+F++FE ++A A A +++L + VE +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVEYA 162
Query: 235 RKRDGPRE 258
K D R+
Sbjct: 163 LKDDDERD 170
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDA 177
V+VG ++ DLER FDKYG+++ V + G+AF+ FE+ ++AEDA
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFVYFEDERDAEDA 51
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 186
R ++GGL L F+KYG L V L+ GF FI F+ + ++A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 187 MNGTEMLGATLKVEISRKRDG 249
MNG ++ G T+ V+ ++ G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQG 88
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.4 bits (100), Expect = 5e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEA 168
TM G + VYVGGL I +E + R F YG + +V + ++ + F+ F N + A
Sbjct: 2 TMDDGNS-VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 169 EDACSAMNGTEMLGATLKVEISRKRDGPREVG 264
+DA M+G + G ++V R G G
Sbjct: 61 DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 171
+S +++++GGL + ++ L+ F +G++ V +A + GF F++F +A
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 172 DACSAMNGTEMLGATLKVE--ISRKRDGP 252
A AM+G +LG L++ + R R GP
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALERVRGGP 125
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 44.4 bits (100), Expect = 5e-05
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 171
+ G RVYVG L G+ LE F + GK+ V + GF F+ +++ QE +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 172 DACSAMNGTEMLGATLKVEISRKRDGPRE 258
+A +++G ++ G ++V + R R+
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEARPPRRQ 288
Score = 33.5 bits (73), Expect = 0.096
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAED 174
S +++VG L + L + F+ G + V V + GF F+ ++ E E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 175 ACSAMNGTEMLGATLKV 225
A NG E+ G L+V
Sbjct: 148 AAQQFNGYELDGRPLRV 164
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 44.4 bits (100), Expect = 5e-05
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Frame = +1
Query: 7 SSGG-TRVYVGGLVEGIKKEDLEREFDKYGKL---NSVW--VALNPPGFAFIEFENLQEA 168
SSG T++YV GL ++ L F+++G L N V VA P GFAF+ +E +EA
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131
Query: 169 EDACSAMNGTEMLGATLKVEISRKR 243
A M+G + G + VE ++ R
Sbjct: 132 MKAIQGMHGKFLDGRVIFVEEAKTR 156
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 171
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 245 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 172 DACSAMNGTEMLGATLKVEISRKR 243
A +++NG ++ G ++V + R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 186
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 187 MNGTEMLGATLKV 225
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAE 171
S G R+YVG L G+ LE F++ GK+ V + GF F+ + QE +
Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 172 DACSAMNGTEMLGATLKVEISRKR 243
A +++NG ++ G ++V + R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 30.7 bits (66), Expect = 0.68
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 186
+++VG L + L + F+ G + V V + GF F+ E E A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 187 MNGTEMLGATLKV 225
NG E G L+V
Sbjct: 160 FNGYEFEGRPLRV 172
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 43.6 bits (98), Expect = 9e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 168
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 169 EDACSAMNGTEMLGATLKVEISRKR 243
DA MNG E+ G + V ++ R
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 43.6 bits (98), Expect = 9e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 168
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 169 EDACSAMNGTEMLGATLKVEISRKR 243
DA MNG E+ G + V ++ R
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 43.6 bits (98), Expect = 9e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 168
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 169 EDACSAMNGTEMLGATLKVEISRKR 243
DA MNG E+ G + V ++ R
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQSR 85
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Frame = +1
Query: 55 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 234
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE +
Sbjct: 82 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 138
Query: 235 RKRDGPRE 258
+ G RE
Sbjct: 139 LREAGERE 146
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPREVGS-EVGAAVTS 291
G+AF+ FE+ ++AEDA + T K+ + +D E G G AV++
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDGKAVSN 64
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 43.6 bits (98), Expect = 9e-05
Identities = 21/68 (30%), Positives = 40/68 (58%)
Frame = +1
Query: 55 KKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 234
++ D+ER F+ YGK+ +V + N FAF++F ++A A + + +++L + VE +
Sbjct: 108 RERDMERHFEPYGKVLNVRMRRN---FAFVQFATQEDATKALDSTHNSKLLDKVVSVEYA 164
Query: 235 RKRDGPRE 258
+ G RE
Sbjct: 165 LREAGERE 172
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
VYVG + DLER F K+G++ V + G+AF+ FE+ ++AEDA + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVYFEDERDAEDAIRRTDNTTF 60
Query: 205 LGATLKVEISRKRDGPREVGS-EVGAAVTS 291
K+ + +D E G G AV++
Sbjct: 61 GYGRRKLSVEWAKDFQGERGKPRDGKAVSN 90
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
+++++GG+ + ++ L F KYG++ V L+ GF F+ F + + A A
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 184 AMNGTEMLGATLKVEISRKR 243
A++G ++ G +KV + R
Sbjct: 100 ALDGRDLHGRVVKVNYANDR 119
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
R+YVG L + LER F ++GK+ V + GF F++ N E A +A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 187 MNGTEMLGATLKVEISRKR 243
++G + G +KV ++ +R
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
Score = 30.3 bits (65), Expect = 0.89
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 186
+++VG L + + L F++ G + V N GF F+ ++EAE A
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 187 MNGTEMLGATLKVEISRKR 243
N E+ G L V + R
Sbjct: 174 FNSFEVNGRRLTVNRAAPR 192
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 181 SAMNGTEMLG 210
+N + + G
Sbjct: 131 KYLNQSVLEG 140
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
GT +YV GL + +DLE F K GK+ S ++ + P GFAF+ +L++AE
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 181 SAMNGTEMLG 210
+N + + G
Sbjct: 130 KYLNQSVLEG 139
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 186
+VYVG L + + KE LE F + GK+ S V+ P GF F+ F + ++ E A A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 187 MNGTEMLGATLKV 225
+N + + G ++V
Sbjct: 238 LNNSLLEGQKIRV 250
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAE 171
S RVY+G + + E L + +++G + V V + F F +++++A
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 172 DACSAMNGTEMLGATLKVEISRK 240
+NG + G +KV I+ K
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEK 154
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/73 (27%), Positives = 42/73 (57%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
T ++VG + + + ++DL+ F ++G+L V + F+++ N AE A S +NGT
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG-KRCGFVQYANRACAEQALSVLNGT 336
Query: 199 EMLGATLKVEISR 237
++ G ++++ R
Sbjct: 337 QLGGQSIRLSWGR 349
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
RVYVG L + LE+ F ++GK+ V + GF F+ ++ E +A SA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 187 MNGTEMLGATLKVEISRKR 243
++G + G ++V ++ +R
Sbjct: 305 LDGQNLEGRAIRVNVAEER 323
Score = 30.3 bits (65), Expect = 0.89
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 186
+++VG L + + L F++ G + V N GF F+ ++ EAE A
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 187 MNGTEMLGATLKVEISRKR 243
N ++ G L V + R
Sbjct: 211 FNRYDLNGRLLTVNKAAPR 229
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 186
T VYV L E ++L+ F +YG ++S V + G F F+ FEN ++A A A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 187 MNG 195
+NG
Sbjct: 285 LNG 287
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 183
G +YV L + + E L F ++G + S V +P G + F+ F EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 184 AMNGTEMLGATLKVEISRKRDGPR 255
MNG + G L V ++++++ R
Sbjct: 387 EMNGKMVGGKPLYVALAQRKEERR 410
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPGFAFIEF--ENLQEAEDA 177
S GG R++VGGL E + ++DL + F G +++V +V FA+I+F +
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKL 65
Query: 178 CSAMNGTEMLGATLKVEISRK 240
S NG G L++E +++
Sbjct: 66 FSTYNGCVWKGGRLRLEKAKE 86
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEA 168
+ + T +Y+G + G + ++E F ++G + V VA N F FI+FE+ + A
Sbjct: 55 LQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
Query: 169 EDACSAMNGTEMLGATLKVEI 231
E A AMN ++ LKV +
Sbjct: 115 EIAAGAMNDYLLMEHMLKVHV 135
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 41.5 bits (93), Expect = 4e-04
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 186
T VYV L+E + + L F +YG ++SV V + GF F+ F N + A+ A +
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMES 261
Query: 187 MNGTEMLGATLKVEISRKRDGPREV 261
+ G ++ L V + K+D RE+
Sbjct: 262 LCGLQLGSKKLFVGKALKKDERREM 286
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDAC 180
+G +YV L I LER F +G + S V GF F++F+ Q A A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 181 SAMNGTEMLGATLKV 225
SA++G+ + G L V
Sbjct: 169 SALHGSMVYGKKLFV 183
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 186
+ +YV L E + + L F YG++ S V + GF F+ F N +E++ A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 187 MNGTEMLGATLKVEISRKRD 246
+NG + G + V ++ +++
Sbjct: 364 LNGFLVDGKPIVVRVAERKE 383
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T + V L ++EDL R F+++G + +++ + P GF FI+F + +A +A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 184 AMNGTEMLGATLKVEISRK-RDGPREV 261
M+G +LG L V + + R P E+
Sbjct: 97 QMDGYLLLGRELTVVFAEENRKKPTEM 123
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACS 183
G+ +Y+ L + + E L+ F +YG + S V +N G F F+ + N +EA A
Sbjct: 327 GSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMK 386
Query: 184 AMNGTEMLGATLKVEISRKRD 246
MNG + L V ++++++
Sbjct: 387 EMNGKMIGRKPLYVALAQRKE 407
Score = 39.5 bits (88), Expect = 0.001
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 186
T VYV L + I ++L++ F KYG ++S V + G F F+ F + + A A
Sbjct: 225 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 187 MNGTEMLGATLKVEISRKRDGPRE 258
MNG + L V ++K+ E
Sbjct: 285 MNGISLGEDVLYVGRAQKKSDREE 308
Score = 33.5 bits (73), Expect = 0.096
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEA 168
T SG V++ L I + L F +G + S VA++ G+ F++FE + A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 169 EDACSAMNG 195
+ A +NG
Sbjct: 186 QAAIDKLNG 194
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T + V L ++EDL + F+++G + +++ + P GF F++F + +A DA
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 184 AMNGTEMLGATLKVEISRK-RDGPREV 261
M+G +LG L V + + R P E+
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKPTEM 122
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSA 186
++YVG L + + L + F+ +G + V + L+P GF FI+F L+ ++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 187 MNG-TEMLGATLKV 225
+NG E+ G T+KV
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 37.1 bits (82), Expect = 0.008
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +1
Query: 58 KEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 192
++D+ E KYG +N ++V N GF ++ F++++ A A AM+
Sbjct: 458 RDDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMH 502
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 41.1 bits (92), Expect = 5e-04
Identities = 23/73 (31%), Positives = 39/73 (53%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 186
SS G ++V L I E+L F YG++ V ++ +IEF ++++A+ A
Sbjct: 292 SSEGA-LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQG 350
Query: 187 MNGTEMLGATLKV 225
+NG E+ G LK+
Sbjct: 351 LNGLEVAGRQLKL 363
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 41.1 bits (92), Expect = 5e-04
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDAC 180
G+R++VGGL + DLER F ++G + + L GF FI F + + +++
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI 65
Query: 181 SAMNGTEMLGATLKVEISRKRDGPREVGSEVGA 279
M+G + + V + + G R+ G G+
Sbjct: 66 REMHGRDFGDRVISVNRAEPKLG-RDDGESHGS 97
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 189
++V + G K+ L R F+K+G++ ++ +P G A+IEF + AE+A S +
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-L 576
Query: 190 NGTEMLGATLKV 225
+GT + LK+
Sbjct: 577 DGTSFMSRILKI 588
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 192
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 193 GTEMLGATLKVEISR 237
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 192
VYVG + E+++ F G +N V + ++ P GFA++EF ++ ++A +N
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 193 GTEMLGATLKVEISR 237
+E+ G LKV R
Sbjct: 150 ESELHGRQLKVSPKR 164
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREF-DKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSA 186
+VY G L + + L+ F D+ G L + + GF FI FE+ + + A +
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 187 MNGTEMLGATLKVEISRKRDGP 252
MNG E+ G L++ ++ +R+ P
Sbjct: 280 MNGVEVEGRALRLNLASEREKP 301
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 231
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 281 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
Query: 232 SR 237
SR
Sbjct: 341 SR 342
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 231
+ ++L + F YG++ + N FIE+ ++++AE A A+N +E+ G +K+E+
Sbjct: 294 VSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
Query: 232 SR 237
SR
Sbjct: 354 SR 355
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 186
T VYV L E + E+L + F ++G S + + GF F+ FEN +A A A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 187 MNG 195
+NG
Sbjct: 284 LNG 286
Score = 40.3 bits (90), Expect = 8e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDA 177
S G+ +YV L E + + L F +G + S V +P G + F+ F +EA A
Sbjct: 324 SQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRA 383
Query: 178 CSAMNGTEMLGATLKVEISRKRD 246
+ MNG ++ L V ++++++
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKE 406
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSA 186
T VYV LVE DL+R F ++G++ S V + G F F+ FE + A A
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 187 MNG 195
MNG
Sbjct: 179 MNG 181
Score = 36.3 bits (80), Expect = 0.014
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFA----FIEFENLQEAEDACS 183
G +YV L + + LE F ++G + S V ++ G + F+EF +EA A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAML 281
Query: 184 AMNGTEMLG 210
MNG +M+G
Sbjct: 282 KMNG-KMVG 289
Score = 31.9 bits (69), Expect = 0.29
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDA 177
SG V+V L E I + L F +GK+ S VA + G + F++F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 178 CSAMNGT 198
C+ NGT
Sbjct: 88 CNFHNGT 94
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
T V+VGGL + + L+ F +YG++ V + F++F AE+A +NG
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGV 319
Query: 199 EMLGATLKVEISR 237
++ G T+++ R
Sbjct: 320 QLGGTTVRLSWGR 332
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDAC 180
G +YV GL + + DLE F K GK+ V + L+P GF FI +++ +A
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 181 SAMNGTEMLGATLKVE 228
+++ + + G + VE
Sbjct: 104 RSLDHSVLQGRVITVE 119
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 187 MNGTEMLGATLKVEISRKRDGPREVG--SEVGAAVTSGV 297
E+ G ++V KR P+E+ S + + + SGV
Sbjct: 170 KTFHELNGKLVEV----KRAVPKEISPVSNIRSPLASGV 204
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 187 MNGTEMLGATLKVEISRKRDGPREVG--SEVGAAVTSGV 297
E+ G ++V KR P+E+ S + + + SGV
Sbjct: 170 KTFHELNGKLVEV----KRAVPKEISPVSNIRSPLASGV 204
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGGL I +E+ + FD++G + V V + P GF FI F++ +A D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 187 MNGTEMLGATLKVEISRKRDGPREVG--SEVGAAVTSGV 297
E+ G ++V KR P+E+ S + + + SGV
Sbjct: 170 KTFHELNGKLVEV----KRAVPKEISPVSNIRSPLASGV 204
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 40.3 bits (90), Expect = 8e-04
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSA 186
T +Y+ L + ++ L +F ++GK+ S+ +A + G+AF+ F+N ++A A
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 187 MNGTEMLGATLKVEISRKR 243
+NGT+ L V ++K+
Sbjct: 261 VNGTKFGSKCLYVGRAQKK 279
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 189
VYVGG+ + + DL F +YG++ V + + GFAF+ +E+ + A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 190 NGTEMLGATLKVE 228
NG +LG T+KV+
Sbjct: 98 NGALVLGRTIKVD 110
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 184 AMNGTEMLGATLKVEISRKR-DGPR 255
M+G E+ G ++V ++ +R PR
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPR 119
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
++++VGGL G L++ F +G++ V + GF F+ F A +A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 184 AMNGTEMLGATLKVEISRKR-DGPR 255
M+G E+ G ++V ++ +R PR
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPR 119
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
TRVYVG L + L F YG + V + GF F+ + + EAE A S
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 184 AMNGTEMLGATLKVEI 231
M+G E+ G + V++
Sbjct: 63 GMDGKELNGRRVSVKL 78
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +1
Query: 55 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATL 219
+ E+L F+++G + V++ + P GFAF+EF + +A +A +MN G +
Sbjct: 59 RPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREI 118
Query: 220 KVEI-SRKRDGPREV 261
V + S R P E+
Sbjct: 119 TVVVASESRKRPEEM 133
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.5 bits (88), Expect = 0.001
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Frame = +1
Query: 7 SSGGTR-VYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAE 171
+ GG++ ++ G L I + D+E F + G++ V ++ + G+ IEF + +EA+
Sbjct: 379 TQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQ 438
Query: 172 DACSAMNGTEMLGATLKVEISRKRDGPR 255
A MNG +LG ++++++ +R PR
Sbjct: 439 KALE-MNGKLLLGRDVRLDLANERGTPR 465
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
++V L + ++REF+ YG + V + + P G+AFIE+ + ++ + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 190 NGTEMLGATLKVEISRKRD----GPREVGSEVGAAVTSG 294
+G ++ G + V++ R R PR +G +G + G
Sbjct: 200 DGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGG 238
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 196 TEMLGATLKVEISR 237
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/87 (19%), Positives = 38/87 (43%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 205 LGATLKVEISRKRDGPREVGSEVGAAV 285
L + S +D P E G V
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLV 256
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 38/74 (51%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
GT V V L I +DL F +G++ + + F+EF +++ AE A A+N
Sbjct: 253 GTLV-VFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 196 TEMLGATLKVEISR 237
E+ G +KVE SR
Sbjct: 312 CEIAGKRIKVEPSR 325
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/87 (19%), Positives = 38/87 (43%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
++V + ++ +L F++YG + +++ GF I + +++ A A ++ +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 205 LGATLKVEISRKRDGPREVGSEVGAAV 285
L + S +D P E G V
Sbjct: 230 RRRKLDIHFSIPKDNPSEKDMNQGTLV 256
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 165
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 333 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 392
Query: 166 AEDACSAMNGTEMLGATLKVEISR 237
A++A + MNG ++ G LKV++ R
Sbjct: 393 AQNAINTMNGCQLSGKKLKVQLKR 416
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 189
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 190 NGTEML 207
NG ++
Sbjct: 170 NGRHIM 175
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +1
Query: 1 TMSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQE 165
T G +++ + + ++L F +GK+ S V ++ F FI +++
Sbjct: 324 TEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAA 383
Query: 166 AEDACSAMNGTEMLGATLKVEISR 237
A++A + MNG ++ G LKV++ R
Sbjct: 384 AQNAINTMNGCQLSGKKLKVQLKR 407
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAM 189
+++VG L + + + +++ F +YG + + + G F+++E+ ++A A A+
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 190 NGTEML 207
NG ++
Sbjct: 161 NGRHIM 166
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 192
+YVG + E++++ F G +N V + + P GFA++EF ++ +++ +N
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSL-ILN 163
Query: 193 GTEMLGATLKVEISR 237
+E+ G +KV R
Sbjct: 164 ESELHGRQIKVSAKR 178
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 189
++VG L +G +EDL++ F G++ V + NP G AF+ F +++A+ A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 190 NGTEMLGATLKVEISRKRD 246
+ G V S+ D
Sbjct: 276 KSPMINGKKCGVTASQDND 294
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/78 (29%), Positives = 37/78 (47%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 198
T V GL + L + F + +L P GF FI FE+ +A+ A A+NG
Sbjct: 71 TCVSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
Query: 199 EMLGATLKVEISRKRDGP 252
+ G + VE +++ + P
Sbjct: 131 IVNGRLIFVETAKEVEAP 148
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
+++++GGL ++ L F K G++ + ++ GF F+ F + EA+ A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 184 AMNGTEMLGATLKVEISRKR 243
NG ++ G T+ V+ ++ +
Sbjct: 94 EFNGQQLNGRTIFVDYAKAK 113
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDAC 180
G+ V++GGL + +EDL ++ G++ V + + + G+AF+ F+ A+ A
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 181 SAMNGTEMLGATLKVEISRKRD 246
++ E G T++ +S ++
Sbjct: 175 EELHSKEFKGKTIRCSLSETKN 196
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 37.9 bits (84), Expect = 0.004
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Frame = +1
Query: 4 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 162
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 163 EAEDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSG 294
+DA MNG ++ G ++ V ++ R G G + G
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGHRGGGSYGGG 104
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
++++VGGL E L+ F +GK+ V L+ GF F+ +++++ A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 184 AMNGTEMLGATLKV 225
AM E+ G + V
Sbjct: 96 AMQNKELDGRIIGV 109
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 37.5 bits (83), Expect = 0.006
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQEA 168
MS R +VGGL EDL+R F ++G K+ + + GF F+ F++ +
Sbjct: 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 169 EDACSAMNGT 198
DA MNG+
Sbjct: 61 RDAIEEMNGS 70
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 177
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 178 CSAMNGTEMLGATLKV 225
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 177
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 178 CSAMNGTEMLGATLKV 225
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 177
G R++VGGL + + + +G L + N G+AF +++L + A
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIA 416
Query: 178 CSAMNGTEMLGATLKV 225
C+A+NG +M TL V
Sbjct: 417 CAALNGIKMGDKTLTV 432
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 37.1 bits (82), Expect = 0.008
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Frame = +1
Query: 7 SSGGTR---VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQ 162
+ GG R ++VGGL I + + + FD++G + V V + P GF FI F++ +
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-E 173
Query: 163 EAEDACSAMNGTEMLGATLKVEISRKRDGPREVGS 267
E+ D E+ G ++V KR P+E+ S
Sbjct: 174 ESVDMVLHKTFHELNGKMVEV----KRAVPKELSS 204
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 37.1 bits (82), Expect = 0.008
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 184 AMNGTEMLGATLKVEISRKR-DGPREVGSEVGAAVTSG 294
M+G E+ G ++V + R PR G G + G
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRAYGGGGGYSYGGG 132
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGA 279
G+ F+ F +EAE+A + +NG E++G + ++ S + E G V A
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEA 286
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 37.1 bits (82), Expect = 0.008
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = +1
Query: 4 MSSGGT--RVYVGGLVEGIKKEDLEREFDKYG-----KLNSVWVALNPPGFAFIEFENLQ 162
M+SG R +VGGL LE F +YG K+ + GF F+ F++ +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 163 EAEDACSAMNGTEMLGATLKVEISRKR 243
+DA MNG ++ G ++ V ++ R
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
++++VGG+ + L F KYG++ + ++ GFAF+ F + +EA +A
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 184 AMNGTEMLGATLKVEISRKR 243
++G ++ G ++V + +R
Sbjct: 94 -LDGQDLHGRRIRVNYATER 112
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDAC 180
T+V+VGGL + E L R FD+YG + V + G+ F+ F + + A AC
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T++YVGGL +KE L F ++G++ V V + G+ F+ F++ + A AC
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 184 AMNGT 198
N T
Sbjct: 73 DPNPT 77
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
+YVGGL I ++D+ +F +G++ S+ + L AF+ + + + AE A ++ +
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRI-LADKACAFVTYTSREGAEKAAQELSNRLV 288
Query: 205 L-GATLKVEISRKRDGPREVGSEVGAAVTSGVVVHSEVREE 324
+ G LK+ R + ++ ++ G SG++ + + ++
Sbjct: 289 INGQRLKLTWGRPKP-DQDGANQQGGVAHSGLLPRAVISQQ 328
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMN 192
V+VG + E++++ F G ++ V + + P GFA++EF ++ ++A +N
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 193 GTEMLGATLKV 225
+E+ G LKV
Sbjct: 153 ESELHGRQLKV 163
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 36.3 bits (80), Expect = 0.014
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV----ALN-PPGFAFIEFENLQEAEDACSA 186
+++VGGL + E+ + F+ YG + V + A N P GF F+ F++ ++A D+
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLH 169
Query: 187 MNGTEMLGATLKVEISRKRD-GPREVGSEVGAAVTSG 294
++ G ++V+ + +D P G +G + G
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGG 206
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEA 168
M S +++VGG+ ++ L F YG+++ V + P GF F+ F +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 169 EDACSAMNGTEMLGATLKVEISRKRDGPREVGSEVGAAVTS 291
+ + + +K +SR+ ++V G TS
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREE---QQVSGRTGNLNTS 98
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.3 bits (80), Expect = 0.014
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
T++++GGL G L F +G + V ++ GF F+ F + A A S
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 184 AMNGTEMLGATLKVEISRKR-DGPREVGSEVG 276
M+G E+ G ++V + R PR G G
Sbjct: 95 EMDGKELNGRHIRVNPANDRPSAPRAYGGGGG 126
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.018
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 61 EDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 228
ED+ F+KYG + + ++++ G FIE + +EA A ++ E G LKV+
Sbjct: 108 EDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVD 167
Query: 229 IS----RKRDGPREVGSEV 273
+ +K PRE S V
Sbjct: 168 YAKTKKKKTYAPRETPSPV 186
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 35.9 bits (79), Expect = 0.018
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAM-NGTE 201
+YVGGL + ++D+ +F +G++ S+ + L AF+ + + AE A + N
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI-LAEKACAFVTYTTREGAEKAAEELSNRLV 288
Query: 202 MLGATLKVEISRKR-DGPREVGS-EVGAAVTSGVVVHSEVREE 324
+ G LK+ R + P + GS + G+ SG++ + + ++
Sbjct: 289 VNGQRLKLTWGRPQVPKPDQDGSNQQGSVAHSGLLPRAVISQQ 331
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.018
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
R +VGGL ++ +ER F+++G++ + ++ GF F+ F++ A
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 187 MNGTEMLGATLKVE 228
MNG E+ G + +
Sbjct: 105 MNGQELDGRNITAQ 118
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.9 bits (79), Expect = 0.018
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAM 189
+YVGGL + + + L F +G + V L+ F F+ F ++A A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 190 NGTEMLGATLKV 225
+G E+ G L V
Sbjct: 75 DGAELYGRVLTV 86
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T VY+G + +E L F + G++ + + L+ P GF F+ F + ++ EDA
Sbjct: 34 TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
Query: 184 AMNGTEMLGATLKVE 228
++GT + ++V+
Sbjct: 94 YISGTILDDRPIRVD 108
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
+++G L + + L F + G+L SV V N P G+ FIEF + AE
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 190 NGTEMLGATLKVEIS 234
NGT+M G L ++
Sbjct: 86 NGTQMPGTELTFRLN 100
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 189
V V L E ++ DL F +G + V+VA++ GF F+ F + ++A+ A + +
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 190 NGTEMLGATLKVEISRKR 243
NG L+VE + R
Sbjct: 275 NGYGYDNLILRVEWATPR 292
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDACS 183
T+V+VGGL + E L + F++YG+ L +V +A G+ F+ F + + A AC+
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 35.1 bits (77), Expect = 0.031
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Frame = +1
Query: 10 SGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAED 174
S + ++V G+ +E L + F +YG++ V V ++ P GFA++ F + +EAE
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 175 ACSAMNGTEMLGATLKVEISR 237
A +N + G + ++ ++
Sbjct: 78 ALLELNAQLVDGRVVILDTTK 98
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.1 bits (77), Expect = 0.031
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
T++Y G L + L + + V V N GFAF+ N+++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 184 AMNGTEMLGATLKVEISRK 240
++GTE LG LKV + K
Sbjct: 145 NLDGTEYLGRALKVNFADK 163
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 189
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 190 NGT-EMLGATLKVEI 231
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAM 189
+++VG L + + + +++ F KYG + + + G AF+++E ++A A ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 190 NGT-EMLGATLKVEI 231
NG +M G+T+ + +
Sbjct: 167 NGKHKMEGSTVPLVV 181
Score = 31.5 bits (68), Expect = 0.39
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDAC 180
G +++ + ++L F +G + S V ++ F F+ +++ A++A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI 407
Query: 181 SAMNGTEMLGATLKVEISR 237
MNG + G LKV++ R
Sbjct: 408 DMMNGRHLGGKKLKVQLKR 426
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 34.7 bits (76), Expect = 0.042
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +1
Query: 13 GGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDA 177
G R++VGGL + + + +G L + N G+AF +++ + A
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
Query: 178 CSAMNGTEMLGATLKV 225
C+A+NG +M TL V
Sbjct: 433 CAALNGIKMGDKTLTV 448
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GT++Y+ L G+ ED++ F + G L + + G A + F +A A
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 184 AMNGTEMLGATLKVEI 231
N ++ G +K+EI
Sbjct: 167 RYNNVQLDGKLMKIEI 182
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.9 bits (74), Expect = 0.073
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 31 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 210
V L I ++L R YG++ + ++ +IEF +++ A A +NG E+ G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 211 ATLKV 225
L++
Sbjct: 366 KKLQL 370
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.073
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSA 186
T+++V + K +L + F +G++ S+ + G+AF+EF QEA +A A
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKA 728
Query: 187 MNGTEMLGATLKVE 228
+ T G L +E
Sbjct: 729 LASTHFYGRHLVLE 742
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 133 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 240
F FI F + QEA+ A N T + + + VEI+ K
Sbjct: 11 FGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHK 46
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 33.5 bits (73), Expect = 0.096
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +1
Query: 31 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 210
V L + E L + F G + + + A+IE+ N +EA A A+N TE+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT-DSKHIAYIEYSNSEEAT-AALALNNTEVFG 412
Query: 211 ATLKVEISR 237
L VEI++
Sbjct: 413 RALNVEIAK 421
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.5 bits (73), Expect = 0.096
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP--GFAFIEFENLQEAEDACSAM 189
G + V L +GI + + R F +YG ++V AF++F+N A A +
Sbjct: 27 GVTLLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQL 85
Query: 190 NGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSG 294
NG LG L+V+ + K + ++ ++ +VT G
Sbjct: 86 NGLRFLGKVLQVQRANKPNDNKK-SRQIEESVTKG 119
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 184 AMNGTEMLGATLKVEI 231
N ++ G +K+EI
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 184 AMNGTEMLGATLKVEI 231
N ++ G +K+EI
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GT++Y+ L G+ ED++ F + G+L V + G A + + +A A
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 184 AMNGTEMLGATLKVEI 231
N ++ G +K+EI
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T ++V GL + E L F ++G++ V + GF F+ + L+++ +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 184 AMNGTEMLGATLKVEISRKRD 246
M+G + G + E +R R+
Sbjct: 116 GMDGKFLDGWVIFAEYARPRE 136
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD-GPREVGS 267
+AF+EF + ++A+DA ++G + G+ + VE SR G R+ GS
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGS 50
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAM 189
++YV L + K ++ F +YG + +++AL+ G+AF++F + A A A+
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 190 NG 195
NG
Sbjct: 268 NG 269
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GTR++V L +G+ ED+ F + G++ + + P G A + + +A A
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 184 AMNGTEMLGATLKVEI 231
N + G +++EI
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 58 KEDLEREFDKYGKLNSVWVALN-PPGFAFIEFENLQEAEDACSAMNG 195
+ED++ E K+G +SV V + P G + F++ ++A+ AMNG
Sbjct: 430 EEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACS 183
TR++V + + + D F++YG++ +++ + G FI F + ED
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--- 147
Query: 184 AMNGTEMLGAT 216
M T LG T
Sbjct: 148 LMEDTHDLGGT 158
Score = 31.1 bits (67), Expect = 0.51
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 180
G +++VG L + +DL F ++G + ++ +P GF F+ F A+
Sbjct: 239 GNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRV- 297
Query: 181 SAMNGTEMLGATLKVEISRKRDGPREVGSEVGAA 282
A E+ G + ++ + D E G GA+
Sbjct: 298 -ARRSHEICGQEVAIDSATPLD---EAGPSAGAS 327
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDACSAMNGTEMLGA 213
+K+ED+E F +YGK+NSV + + G A +EF ++A++ G
Sbjct: 127 VKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK--QNLVFAGQ 184
Query: 214 TLKVEISRKRDGPRE 258
L+++ ++ D RE
Sbjct: 185 ELELKPKKEFDNERE 199
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGK-LNSVWVA----LNPPGFAFIEFENLQEAEDAC 180
T+V+VGGL KE + F KYG L +V ++ G+ F+ F++ + A AC
Sbjct: 17 TKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
+++ L + KE++++ F +G++ S+ + L+ P G AF++F+ + A SA
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 190 NGTEMLGATLK 222
+ +G LK
Sbjct: 623 DTASGVGVLLK 633
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 189
V V GL I LE F + G + ++ N GFAF++F ++ A
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 190 NGTEMLGATLKVEISRKRDGPRE 258
NG+ + G + V+ + R +E
Sbjct: 82 NGSTVGGRRITVKQAAHRPSLQE 104
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +1
Query: 55 KKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 195
K D++ F G + V++ N P GFAF++F ++A +A NG
Sbjct: 343 KPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACS 183
GT VY+ L +G+ ED+ + + G+L + + P G A + + +A A
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 184 AMNGTEMLGATLKVEI 231
N + G +K+EI
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 183
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 184 AMNGTEMLGATLKVEISRKR 243
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRIQYAKSK 90
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 32.3 bits (70), Expect = 0.22
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 183
+Y+ + E IKKE+L+R F ++G+L V VAL P G A++ F + A +A
Sbjct: 12 IYIKHINEKIKKEELKRSLYCLFSQFGRLLDV-VALKTPKLRGQAWVVFTEVTAASNAVR 70
Query: 184 AMNGTEMLGATLKVEISRKR 243
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRIQYAKSK 90
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T++YV GL + E L F+++G++ V + GF F+ F ++ A AC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 184 AMNGT 198
N T
Sbjct: 69 NPNHT 73
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN--PPGFAFIEFENLQEAEDACSAMNG 195
+YV L I E++ F KYG + + + + G AF+ +E++ +A++A ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/90 (20%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGGL + ++ F+ YG ++ + ++ P GF F+ F++ +++ D
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDS-EDSVDLVLH 169
Query: 187 MNGTEMLGATLKVEISRKRDGPREVGSEVG 276
++ G ++V+ + +D + S G
Sbjct: 170 KTFHDLNGKQVEVKRALPKDANPGIASGGG 199
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVAL-----NPPGFAFIEFEN 156
+++VGG+ + +E L++ F +YG + VA P GF F+ F N
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAN 56
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 31.5 bits (68), Expect = 0.39
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 186
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 318
Query: 187 MNGTEMLGATLKVEISRKRDGPREV 261
LG +V I +R P V
Sbjct: 319 --SPIYLGGR-QVYIEERRPNPAGV 340
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 31.5 bits (68), Expect = 0.39
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG------FAFIEFENLQEAEDACSA 186
VYV L I ++E EF +G + V L +AF+EFE++ E+A A
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIKA 377
Query: 187 MNGTEMLGATLKVEISRKRDGPREV 261
LG +V I +R P V
Sbjct: 378 --SPIYLGGR-QVYIEERRPNPAGV 399
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 31.5 bits (68), Expect = 0.39
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 195
VYV + + + +E+L F G++ V +P FAFIEF N +E A +M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 196 TEMLGATLKVEISRKRDGP 252
T + LKV S+ P
Sbjct: 230 TVLGFYPLKVLPSKTAIAP 248
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.5 bits (68), Expect = 0.39
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSA 186
++++ GL ++ L F+ +G+L V + ++ G+AF+E+ + A A
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 187 MNGTEMLGATLKVEISRKR 243
MNG + G + V++++ +
Sbjct: 343 MNGKIINGWMIVVDVAKTK 361
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.5 bits (68), Expect = 0.39
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAM 189
VYVGGL + +E L F + G + +V+V + + FIE+ + ++A+ A +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 190 NGTEMLGATLKVEISRKRDGPREVGSEV 273
N ++ G ++V + + +VG+ +
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANL 114
Score = 30.7 bits (66), Expect = 0.68
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAEDA 177
G +++G L + ++ L F +G + S + P GF FI +++ + ++ A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 178 CSAMNGTEMLGATLKVEISRKRD 246
+M G + + V + K+D
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKD 193
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.5 bits (68), Expect = 0.39
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 190 NGTEMLGATLK 222
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.5 bits (68), Expect = 0.39
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAM 189
++V L + + L+ F +G++ V +A++ P G ++EF+ +AE A M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 190 NGTEMLGATLK 222
+G ++ G +K
Sbjct: 160 DGAQIDGKVVK 170
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.1 bits (67), Expect = 0.51
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSA 186
T +Y+ L + +E L F +GK+ +A + GFAFIEFE+ A A
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 187 MNGTEMLGATLKVEISRKRDGPREV 261
M+G + L V+ + K + R++
Sbjct: 77 MDGRLIGQKILCVQRTPKVEDGRDI 101
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 133 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 237
+AF+EF + ++A+DA ++G + G+ + VE SR
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 31.1 bits (67), Expect = 0.51
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLERE----FDKYGKLNSVWVALNPP---GFAFIEFENLQEAEDACS 183
+Y+ L E IKKE+L+R F ++G++ V VAL P G A++ F + A A
Sbjct: 12 IYIQNLNERIKKEELKRSLYCLFSQFGRILDV-VALKTPKLRGQAWVTFSEVTAAGHAVR 70
Query: 184 AMNGTEMLGATLKVEISRKR 243
M ++++ ++ +
Sbjct: 71 QMQNFPFYDKPMRLQYAKAK 90
>At5g51730.1 68418.m06415 expressed protein
Length = 412
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLER----EFDKYGKLNSVWVALNPPGFAFIE---FENLQEAEDACS 183
++V G + + DL R F G ++ ++ N G A ++ LQ EDA
Sbjct: 195 IFVKGYDSSLGENDLARALLEHFSPCGMISRIYFQTNDAGEAVLKHVFIVMLQGTEDALK 254
Query: 184 AMNGTEMLGATLKVEISRKRD 246
+NG++M G L+V + +RD
Sbjct: 255 -LNGSDMGGCNLEVHDATERD 274
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 67 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 237
L + F YG + + F+EF ++++A A MNG E+ G + +E SR
Sbjct: 229 LRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSR 285
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 30.7 bits (66), Expect = 0.68
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYG--KLNSVWVA-----LNPPGFAFIEFENLQEAED 174
GT ++V L L F +G K N + V NP F FI FE + +
Sbjct: 279 GTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFETVASVQS 338
Query: 175 ACSAMNGTEMLGATLKVEISRKR---DGPREVGSEVGAA 282
A T + A K+ + K DG + G G +
Sbjct: 339 VLQAAKNTPFMLADRKLRVKEKEVDYDGSKPSGKTKGGS 377
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 30.7 bits (66), Expect = 0.68
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSA 186
+VYVG L + + L F K+G + S V + FAF+ F + +E DA +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 187 MNGTEMLGATLKV 225
NGT+ G + V
Sbjct: 272 FNGTQYEGRRIIV 284
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 30.3 bits (65), Expect = 0.89
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAM 189
V V L E + DL F +G + VA++ GF F+ F + ++A+ A + +
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 190 NGTEMLGATLKVEIS 234
NG L+VE S
Sbjct: 236 NGYGYDNLILRVEWS 250
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 30.3 bits (65), Expect = 0.89
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 7 SSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAE 171
+S ++VG L + L + F + + V + GF F+ F N Q+A+
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 172 DACSAMNG 195
A + MNG
Sbjct: 200 TAINEMNG 207
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMNGTEMLGATL 219
+ +E L F + G++ V + G FA+I F QEA+DA + +N + T
Sbjct: 14 VTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVN--KCFIDTY 71
Query: 220 KVEISRKRDGPREVGSE 270
++ + PRE G E
Sbjct: 72 RISVEVADPPPREEGKE 88
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 88 YGKLNSVWVALNPPGFAFIEFENLQE 165
+G +N +W LNPPG A I EN+ E
Sbjct: 405 FGAMN-MWFLLNPPGKATIHVENVDE 429
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 124 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRDGPR 255
P GF FI F++ +A A +++G + G + VE+++ + R
Sbjct: 47 PKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVR 90
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 187 MNGTEMLGATLKVEISR 237
N +M A +VEI +
Sbjct: 170 GNMIDM--ADTQVEIKK 184
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACS 183
T+V+VGGL +++ R FD++G++ + + G+ F+ F + A A +
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
Query: 184 AMN 192
N
Sbjct: 77 DPN 79
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 29.5 bits (63), Expect = 1.6
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Frame = +1
Query: 19 TRVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACS 183
+++ V L ++ L+REF +G++ V + + G+AFI+F + +A A
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 184 AMNGTEMLGATLKVEISRKRDGPREVGSEVGAAVTSGVVVHSEVREEA 327
M+ G + ++I+ + G R+ G TSG S+ EEA
Sbjct: 100 TMDRRMYNGRMIYIDIA--KPGKRDF---QGLPRTSGPPEKSDEPEEA 142
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 195
VYV + + + +E L F G++ + +P FAF+EF + Q A +A S + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 196 TEMLG 210
T MLG
Sbjct: 202 T-MLG 205
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 231
+ L F YG++ V F+EF ++++A A MNG + G + ++
Sbjct: 194 VSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQF 253
Query: 232 SR 237
SR
Sbjct: 254 SR 255
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNG 195
GF F+ F N Q+A+ A + MNG
Sbjct: 194 GFGFVSFRNQQDAQTAINEMNG 215
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 130 GFAFIEFENLQEAEDACSAMNG 195
GF F+ F N Q+A+ A + MNG
Sbjct: 190 GFGFVSFRNQQDAQTAINEMNG 211
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 225
+ I ++ L F YG + + + N P A ++ + +AE A + G + G L+V
Sbjct: 255 DSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEV 314
Query: 226 EISR 237
S+
Sbjct: 315 NFSK 318
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNP 126
V+VG L +KK+ + +EF K+G++ SV + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 67 LEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 231
LE+ FD G++ V+V + AF+ E + AED ++GT+++G T+ V+
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEG-EGAEDKALQLSGTDVVGWTVIVKP 191
Query: 232 S 234
S
Sbjct: 192 S 192
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 186
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 46 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSA 186
E +++ + F K+GK+ + + +N AF++F +EAE A A
Sbjct: 448 ESNRRDLILAHFQKFGKVIDIHIPVNSER-AFVQFSKREEAESALRA 493
>At1g67550.1 68414.m07696 urease, putative / urea amidohydrolase,
putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea
amidohydrolase) {Canavalia ensiformis}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 838
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 295 VVVHSEVREEAGLTTHTVAAAAGRTIVT 378
V +H++ E+G HT+ A GRTI T
Sbjct: 514 VNIHTDTLNESGFVEHTINAFRGRTIHT 541
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 94 KLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 204
K N +W+ ++P G+ FIEF QEA++A +G ++
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +1
Query: 4 MSSGGTRVYVGGLVEGIKKEDLEREFDKYGKLNSV-WVALNPPG--FAFIEFENLQEAED 174
+ ++++GG + I E L +G L + +V+ N AF+E+ +
Sbjct: 35 VEDSSNKIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAFLEYTDGSVTLK 94
Query: 175 ACSAMNGTEMLGATL 219
AC+ +NG + G+ +
Sbjct: 95 ACAGLNGMRLGGSVI 109
>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 248 PSRFLEISTFKVAPNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRS 69
PSR E+S + + P+I P S + P G S + E + P SNSRS
Sbjct: 468 PSRTSELSPWSLFPSIESP---------SASHGGPLPLLPAGPSVSSNEVTMPSSSNSRS 518
Query: 68 RSS 60
S
Sbjct: 519 HRS 521
>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 704
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 248 PSRFLEISTFKVAPNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRS 69
PSR E+S + + P+I P S + P G S + E + P SNSRS
Sbjct: 468 PSRTSELSPWSLFPSIESP---------SASHGGPLPLLPAGPSVSSNEVTMPSSSNSRS 518
Query: 68 RSS 60
S
Sbjct: 519 HRS 521
>At1g79880.3 68414.m09332 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 174
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.2 68414.m09331 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 345
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 174
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 72 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 118
>At1g79880.1 68414.m09333 La domain-containing protein contains Pfam
profile PF05383: La domain; similar to putative protein
GB:CAA18589 [Arabidopsis thaliana]
Length = 399
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +1
Query: 52 IKKEDLEREFDKYGKLNSVWVALNPP------GFAFIEFENLQEAED 174
IK ED+ F +Y K+NSV + N G A +EF + Q+ +D
Sbjct: 126 IKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQD 172
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG---FAFIEFENLQEAEDACSAMNG 195
VYV + + + +E L F G++ + +P FAF+EF + Q A A S + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 196 TEMLG 210
T M+G
Sbjct: 189 T-MIG 192
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 61 EDLEREFDKYGKLNSVWVALNP----PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 228
ED+ EF KYG+L + V N G ++ + +L+ A A ++NG G + E
Sbjct: 309 EDVHTEFLKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCE 368
>At1g05510.1 68414.m00563 expressed protein
Length = 241
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 16 GTRVYVGGLVEGIKKEDLEREFDKYGKLNSVW 111
G +++ G+ E I+++DLE+ YGK+ W
Sbjct: 121 GGFLFMPGVPEAIQRQDLEKVAKTYGKVYHFW 152
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG----FAFIEFENLQEAEDACSAMN 192
++V L K ++ F K G++ V + +N G F+EF ++ EAE+A N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 193 GTEMLGATLKVEISRKR 243
G + + ++++ K+
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 25 VYVGGLVEGIKKEDLEREFDKYGKLNSVWV 114
+YVGGL I ++D+ F YG++ S+ V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.9 bits (59), Expect = 4.8
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWV------ALNPPGFAFIEFENLQEAEDACS 183
+++VG L IKK + E F ++G + +V + GF FI + + A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 184 AMNGTEMLGATLKVEISRKRDGPR 255
+G E G L V++ DG R
Sbjct: 226 -FDGVEFHGRILTVKLD---DGKR 245
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = +1
Query: 22 RVYVGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSA 186
+++VGG+ + +++L+ F KYG + V + GF F+ F++ + ++ S
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 187 MNGTEM 204
N +M
Sbjct: 170 GNMIDM 175
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 27.9 bits (59), Expect = 4.8
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 25 VYVGGLVEGIKKED---LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 195
++V GL E +K + L REF Y + + + + FAF F +LQ A A+NG
Sbjct: 37 LFVAGLPEDVKPREIYNLFREFPGY-ETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Query: 196 TEM-LGATLKVEISRKRDGPREVGSEVG 276
L + I + P+ S G
Sbjct: 96 MVFDLEKHSTLHIDLAKSNPKSKRSRTG 123
>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
similarity to dienelactone hydrolase [Rhodococcus
opacus] GI:23094407; contains Pfam profile PF01738:
Dienelactone hydrolase family
Length = 310
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 40 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEM 204
L IKK + + L +++ G +E ++ E E+AC +NGTE+
Sbjct: 37 LASSIKKHITTSFYRRGSSLKNIYALETSDGAINVEVDD-DEEEEACELVNGTEV 90
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 27.5 bits (58), Expect = 6.3
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +1
Query: 37 GLVEGIKKED--LEREFDKYGKLNSVWVALNPPG--FAFIEFENLQEAEDACSAMNGTEM 204
G +K +D L F +G++ V V PG +AF++F NL A A ++ G
Sbjct: 156 GFPASLKVDDALLRNVFSSFGEITKVTVF---PGRSYAFVQFRNLMAACKAKESLQG--K 210
Query: 205 LGATLKVEISRKRDGPREVGSEVG 276
L +V I + P GS G
Sbjct: 211 LFGNPRVHICFAKSEPSSSGSGRG 234
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 152 SNSM-KAKPGGFSATQTEFSFPYLSNSRSRSSFLIPSTRPPTYTRVPP 12
S+SM KA+P S T S P LS S P++RP T TR P
Sbjct: 230 SSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSP 277
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 190 NGTEMLGATLKVEISRKRDGP 252
NGT +L ATLK+ RK++ P
Sbjct: 2421 NGTSILSATLKISHKRKKNQP 2441
>At5g56180.2 68418.m07009 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 387
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 188 IALHASSASCKFSNSMKAKPGGFSATQTEF 99
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -1
Query: 188 IALHASSASCKFSNSMKAKPGGFSATQTEF 99
I + S CKF S A P G SAT EF
Sbjct: 136 IIIDGGSGYCKFGWSKYASPSGRSATFLEF 165
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 PPGFAFIEFENLQEAEDACSAMNG-TEMLGATLKVEIS 234
P GFAF E+E + A+ A +G + TLK IS
Sbjct: 47 PKGFAFAEYETEEIADYAVKLFSGLVSLYNRTLKFAIS 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,051,902
Number of Sequences: 28952
Number of extensions: 152381
Number of successful extensions: 797
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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