Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120433.Seq
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   1.2  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    24   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.6  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.7  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 272 FGNEHCCGCQIQRVALLCHAIWSMVLD 192
           F   H C   +Q      HA+W MVL+
Sbjct: 343 FRMPHRCHGNLQSCPTRSHAVWEMVLN 369


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 517 RRDAETARQDCENARRETAQLANRMAD 597
           RR+ E A++D  +  + T  + N +AD
Sbjct: 91  RREVEKAKRDLSSVHKTTLTIENLLAD 117


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 562 GARFRNLAEPFQRRVEPQHFVGKQNERSVASAKSA 458
           G  FR+LAE      + QH+    ++  + S +S+
Sbjct: 485 GQSFRSLAEMTSHMQQTQHYTNIISQEQIISWRSS 519


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +1

Query: 55  TCSVMSSQSDLWPR-TSP 105
           TCS++   + LWP+ T P
Sbjct: 81  TCSMLCGSTQLWPQPTGP 98



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 258 LLWVSNTAGRPALPRYLE 205
           ++W SN + RP + +YL+
Sbjct: 453 IIWSSNLSKRPYIYKYLD 470


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,150
Number of Sequences: 336
Number of extensions: 4684
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)