BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120433.Seq (767 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 30 0.42 SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 28 1.7 SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.2 SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 26 6.8 SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.8 SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.8 SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.0 SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 25 9.0 SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 9.0 SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 9.0 >SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 728 Score = 29.9 bits (64), Expect = 0.42 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +3 Query: 237 LYLTPTTVLITKSGVIQLIMKSKLPYAIELQEWLL 341 +Y T L+ K GV+ L+ K KLP+++ ++ ++ Sbjct: 534 IYEVQTRDLLVKDGVVHLVDKVKLPFSVSQKDMII 568 >SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharomyces pombe|chr 2|||Manual Length = 733 Score = 27.9 bits (59), Expect = 1.7 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 582 GQLRRFAARVFAILPSRFSVASSHNISLANKMSDRLLPPNLRWPPSIFASDRQF 421 G L R + + ++ + S ++S N++S L++PPS F S RQF Sbjct: 182 GPLGRSSLNLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQF 235 >SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1147 Score = 27.5 bits (58), Expect = 2.2 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 408 DVIAKIDDLTQKLTVANAD 464 D +KID LT+KL VANA+ Sbjct: 618 DSASKIDSLTEKLKVANAE 636 >SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 25.8 bits (54), Expect = 6.8 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 623 GLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATT 507 GL+ + A M A C++S AF+QS + + A T Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMART 152 >SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 262 Score = 25.8 bits (54), Expect = 6.8 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 124 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 234 I G Y STS +ST+ + P+ SST + S +T Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165 >SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 827 Score = 25.8 bits (54), Expect = 6.8 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +1 Query: 553 NARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGTTSLRFCAAKT 702 N + AQ A R+ + Q++ P+ P+L +L +L +CA T Sbjct: 514 NFALKCAQSAERVVFLLQELAKSPNTPKLFFNLYSGYYALMTLTYCATLT 563 >SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1116 Score = 25.4 bits (53), Expect = 9.0 Identities = 16/59 (27%), Positives = 29/59 (49%) Frame = +3 Query: 66 DEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLY 242 +EQ VRFV++ + L Y++ + I H D K + D + + ++K D +Y Sbjct: 928 EEQLVRFVSRQVLYGLSYLHSKGII--HRDLKADNLLIDFDGVCKISDFGISKHSDNVY 984 >SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 179 Score = 25.4 bits (53), Expect = 9.0 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +3 Query: 327 QEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEATD 482 ++WL E Q + P + D++AKI+D LT+A + + D Sbjct: 34 KQWLTEIESEQTNIKEERDPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLED 85 >SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 669 Score = 25.4 bits (53), Expect = 9.0 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 63 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 188 GDE V+ D S V+ + ++ GKY+ TF H D Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89 >SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 25.4 bits (53), Expect = 9.0 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Frame = +3 Query: 408 DVIAKIDDLTQKLTVANADLAEATDR---SFCLPTKCCGST 521 D I + ++ + T+ D +R +FC +CCG T Sbjct: 50 DTIPSLSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCCGQT 90 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,375,940 Number of Sequences: 5004 Number of extensions: 73850 Number of successful extensions: 227 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 227 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 369323696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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