Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120433.Seq
(767 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 30 0.42
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 28 1.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 2.2
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 26 6.8
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.8
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 9.0
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 9.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 9.0
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 29.9 bits (64), Expect = 0.42
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 237 LYLTPTTVLITKSGVIQLIMKSKLPYAIELQEWLL 341
+Y T L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 534 IYEVQTRDLLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 582 GQLRRFAARVFAILPSRFSVASSHNISLANKMSDRLLPPNLRWPPSIFASDRQF 421
G L R + + ++ + S ++S N++S L++PPS F S RQF
Sbjct: 182 GPLGRSSLNLSSLSHELQTSQDSPSLSATNQLSSSDTLEPLQYPPSSFGSQRQF 235
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 408 DVIAKIDDLTQKLTVANAD 464
D +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 623 GLAITSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATT 507
GL+ + A M A C++S AF+QS + + A T
Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMART 152
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 124 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 234
I G Y STS +ST+ + P+ SST + S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 553 NARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGTTSLRFCAAKT 702
N + AQ A R+ + Q++ P+ P+L +L +L +CA T
Sbjct: 514 NFALKCAQSAERVVFLLQELAKSPNTPKLFFNLYSGYYALMTLTYCATLT 563
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 66 DEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLY 242
+EQ VRFV++ + L Y++ + I H D K + D + + ++K D +Y
Sbjct: 928 EEQLVRFVSRQVLYGLSYLHSKGII--HRDLKADNLLIDFDGVCKISDFGISKHSDNVY 984
>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 327 QEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVANADLAEATD 482
++WL E Q + P + D++AKI+D LT+A + + D
Sbjct: 34 KQWLTEIESEQTNIKEERDPIDPQEIYDLLAKINDPEHPLTLAQLSVVKLED 85
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 63 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 188
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +3
Query: 408 DVIAKIDDLTQKLTVANADLAEATDR---SFCLPTKCCGST 521
D I + ++ + T+ D +R +FC +CCG T
Sbjct: 50 DTIPSLSNVVESQTIPEEDSTSYLNRLEEAFCRDFRCCGQT 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,940
Number of Sequences: 5004
Number of extensions: 73850
Number of successful extensions: 227
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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