Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120433.Seq
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 31 1.0
03_02_0684 - 10389134-10389823 31 1.3
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 29 3.1
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 4.1
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072... 29 5.4
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 28 7.1
10_02_0199 + 6668902-6669293,6669825-6669882 28 7.1
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 7.1
12_02_1226 - 27182423-27182768,27182855-27183765 28 9.4
02_05_0680 - 30824652-30826010 28 9.4
02_05_0136 + 26174965-26175849,26176965-26177030,26177124-261772... 28 9.4
01_01_0105 - 785373-786489,786844-787619 28 9.4
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 305 FGLHYQLNHARFGNEHCCGCQIQRVALLCHAIWSMVLDLVGML 177
F + Y L H G E GC++ R LL H +L L+G+L
Sbjct: 27 FAISYFLTHVGIGEEILIGCKVGRDKLLLHT-GDQLLTLLGIL 68
>03_02_0684 - 10389134-10389823
Length = 229
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 281 HARFGNEHCCGCQIQRVALLCHAIWSMV 198
HA G+ CC +Q VA A+WS+V
Sbjct: 65 HAEPGSGRCCSAVVQHVAAPAAAVWSVV 92
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 596 SAMRLASCAVSRRAFSQSCR-AVSASRRATTFRW 498
SA L S A SRRA S +CR SAS A+ W
Sbjct: 26 SAAHLPSAAASRRASSAACRCTASASASASPSTW 59
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 561 PRNGAAGQPHGGHCARRDSQTQQPAAVPQPGRVRRG 668
P+ A GQP+GG+ +Q PAA P G + G
Sbjct: 177 PQQPAYGQPYGGYPPAPPAQGYPPAAYPPAGYPQGG 212
>07_03_1362 -
26006159-26006461,26006691-26006841,26006975-26007212,
26007293-26007503,26007631-26007755,26007895-26008023,
26008540-26009326
Length = 647
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 643 HSLAVCDVGTT--SLRFCAAKTIAGPQPETIGSNDVIFSSDYC 765
++LA+C GT+ S +C A+T+ + G DV D C
Sbjct: 72 YALALCQGGTSAGSCNYCVAQTMRDGEHACAGDADVAMYDDIC 114
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 198 HHAPDSVAKQGDPLYLTPTTVLITK 272
HHAPD + PL L+PT L+ K
Sbjct: 566 HHAPDMLFSNHCPLLLSPTKQLLRK 590
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 28.3 bits (60), Expect = 7.1
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 525 R*NGSARLRKRAPRNGAAGQPHGGHCARR---DSQTQQPAAVPQPGRVRRGHNEFAFLRR 695
R G R +A N G GG RR + AAVP GR+RRG A +R
Sbjct: 52 RKGGRRRGLAQAAANSGEGNREGGGGWRRFGVGGKAGFAAAVPLGGRIRRGDKAAATVRD 111
Query: 696 K 698
K
Sbjct: 112 K 112
>01_06_1729 +
39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 703 SFLRRRNANSLCPRRTRPG 647
SF R LCPRRTRPG
Sbjct: 88 SFPTRHQQVGLCPRRTRPG 106
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 551 SQSCRAVSASRRATTFRWQTK*AIGCFRQIC 459
S SC+A + T W+ A+GC R +C
Sbjct: 365 SNSCKAGAMCTHYTAIVWKNTTAVGCGRVVC 395
>02_05_0680 - 30824652-30826010
Length = 452
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 547 CENARRETAQLANRMADIAQDVIAKPSNPQ 636
C+N E AN M D +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286
>02_05_0136 +
26174965-26175849,26176965-26177030,26177124-26177258,
26177369-26177434,26177516-26177701,26177777-26177863,
26177985-26178098,26178174-26178298,26178375-26178483,
26179298-26179423,26179511-26179831,26180146-26180269,
26180405-26180529
Length = 822
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 564 RNGAAGQPHGGHCARRDSQTQQPAAVPQPGRVRRGHNEF 680
R+GAA G S T A PQP +RG N++
Sbjct: 98 RDGAAAAAEAGGDGASTSTTSAAATPPQPPSSKRGENKW 136
>01_01_0105 - 785373-786489,786844-787619
Length = 630
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -2
Query: 613 SRLAQCPPCGWPAAPFRGARFRNLAEPFQRRVEPQHFVGKQNERSVASAKSALATVN 443
++ AQCPP W +N++ PF+R +P K +E + K+ + N
Sbjct: 41 AQTAQCPPFSW-------GHLKNVSPPFRRHGDPPDCGYKSHELVCSDTKATIRINN 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,389,284
Number of Sequences: 37544
Number of extensions: 596682
Number of successful extensions: 2108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2107
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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