Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120433.Seq
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 29   4.1  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 29   4.1  
SB_12032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_39103| Best HMM Match : PSI (HMM E-Value=0.0045)                    28   9.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          28   9.5  

>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 638 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 528
           SC  LLGL ++    SAM +  C +S R   Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 499  QRNVVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQL 639
            QR VV+  +A+  +Q C+N  RE    AN+      +V+A PS   L
Sbjct: 1453 QRKVVSL-EAKLQKQQCKNTSRENTSNANKRGSFI-NVLATPSTSAL 1497


>SB_12032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 737 LDPIVSGCGPAIVFAAQKRKLVVPTSHTARLW 642
           ++P+  G  P IV+     K      HT R+W
Sbjct: 16  IEPVFEGFSPHIVYLPSSLKTETDAQHTLRMW 47


>SB_39103| Best HMM Match : PSI (HMM E-Value=0.0045)
          Length = 319

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 685 NANSLCPRRTR-PGCGTAAGCWVWLSRLAQCPP 590
           NA+SLC  +T    CG A  C VW  +  +C P
Sbjct: 120 NASSLCSSKTNCSQCGQAEFC-VWCDKKKECIP 151


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 508  VVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLC 642
            VV R DAE   +     RR     +N    I  ++ +K +NP LC
Sbjct: 3365 VVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 195 QHHAPDSVAKQGDPLYLTPTTVLIT 269
           Q H   S+A QGD +++TP  V++T
Sbjct: 561 QGHVEGSLASQGDQVHITPQGVVMT 585


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 188 VGMLKRRFVLAVDVDTYCPFTIYIF*TAGDVLGHKSDWLLITEHVS*RERVFAKFK 21
           + M +  ++ +V VD Y P   Y+   A  V   K +W+ + E+   +E+VF   +
Sbjct: 419 IDMNELYYICSVRVDGYTPLDQYVKTFAISVSNDKQNWIYVLENG--KEKVFTSLR 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,033,235
Number of Sequences: 59808
Number of extensions: 635398
Number of successful extensions: 1969
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)