Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120432.Seq
         (713 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41434 Cluster: Uncharacterized 54.7 kDa protein in IAP...   200   4e-50
UniRef50_Q1HGY4 Cluster: Putative uncharacterized protein; n=1; ...    96   7e-19
UniRef50_Q9NYZ3 Cluster: G2 and S phase-expressed protein 1; n=1...    33   5.3  
UniRef50_Q4T9R3 Cluster: Chromosome undetermined SCAF7505, whole...    33   7.0  

>UniRef50_P41434 Cluster: Uncharacterized 54.7 kDa protein in
           IAP1-SOD intergenic region; n=13;
           Nucleopolyhedrovirus|Rep: Uncharacterized 54.7 kDa
           protein in IAP1-SOD intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 463

 Score =  200 bits (487), Expect = 4e-50
 Identities = 95/138 (68%), Positives = 99/138 (71%), Gaps = 2/138 (1%)
 Frame = +1

Query: 253 LVNTLHSDWKCIDKWTAFNAPPAYYIRHMFAHPEFRNEFEEKFNDQYWRN-*SITP*LQT 429
           LVNTLHSDWKCIDKWTAFNAPPAYYIRHMFAHPEFRNEFEE FN QYW    + T     
Sbjct: 232 LVNTLHSDWKCIDKWTAFNAPPAYYIRHMFAHPEFRNEFEENFNAQYWHKLINYTVITNV 291

Query: 430 CAPAAFNLMLFQNYKNRVDWTELQQCINF-*I*AFVQXXXXXXXXXXXXXXXXXKLWKAY 606
            A AAFNLMLFQNYKNRVDWTELQQC  F  +    +                 KLWKAY
Sbjct: 292 RASAAFNLMLFQNYKNRVDWTELQQCNQFLNLGVLYRAPFPRVDLQAVPRFDDEKLWKAY 351

Query: 607 GRHLKLNSDECDDPQIIP 660
           GRHLKLNSDECDDPQ+IP
Sbjct: 352 GRHLKLNSDECDDPQVIP 369



 Score =  173 bits (421), Expect = 4e-42
 Identities = 78/84 (92%), Positives = 81/84 (96%)
 Frame = +2

Query: 2   FKEPIKQYIDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREGRV 181
           F+EPIKQYI+YDYV KYKHLN ALIN+ SCMENVNLSAYMQDCVKISDALILYCLREGRV
Sbjct: 148 FQEPIKQYINYDYVSKYKHLNTALINNVSCMENVNLSAYMQDCVKISDALILYCLREGRV 207

Query: 182 QELKLIAHSIPWSDHMLVFDEYPG 253
           QELKLIAHSIPWSDHMLVFDEYPG
Sbjct: 208 QELKLIAHSIPWSDHMLVFDEYPG 231



 Score = 43.6 bits (98), Expect = 0.005
 Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
 Frame = +3

Query: 399 QLINYTVITNVRASGV*PDAVSKLQKSRRLDRTAT--VHQFLNLGVCTERRFP-ASICKQ 569
           +LINYTVITNVRAS      + +  K+R +D T     +QFLNLGV     FP   +   
Sbjct: 281 KLINYTVITNVRASAAFNLMLFQNYKNR-VDWTELQQCNQFLNLGVLYRAPFPRVDLQAV 339

Query: 570 CRGLTTKTLESIRTPFKA*FRRMR*PANYSVNMNVKTAYHR 692
            R    K  ++     K        P    ++MNVKTAYH+
Sbjct: 340 PRFDDEKLWKAYGRHLKLNSDECDDPQVIPLHMNVKTAYHK 380


>UniRef50_Q1HGY4 Cluster: Putative uncharacterized protein; n=1;
           Antheraea pernyi nucleopolyhedrovirus|Rep: Putative
           uncharacterized protein - Antheraea pernyi nuclear
           polyhedrosis virus (ApNPV)
          Length = 447

 Score = 96.3 bits (229), Expect = 7e-19
 Identities = 44/83 (53%), Positives = 58/83 (69%)
 Frame = +2

Query: 2   FKEPIKQYIDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREGRV 181
           F+ PI ++ID+  V K+K LN A      CM  ++L+ YM D  KISDALIL+CLREGR 
Sbjct: 148 FQSPIAEHIDFKLVAKHKRLNRAHFGAPHCMSKIDLTTYMSDPRKISDALILHCLREGRA 207

Query: 182 QELKLIAHSIPWSDHMLVFDEYP 250
            EL+  A ++PW+DHM VFD+YP
Sbjct: 208 -ELRAAAAAVPWADHMRVFDKYP 229



 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 32/88 (36%), Positives = 50/88 (56%)
 Frame = +1

Query: 253 LVNTLHSDWKCIDKWTAFNAPPAYYIRHMFAHPEFRNEFEEKFNDQYWRN*SITP*LQTC 432
           L +TL  +W  +  W+A +APPAYY+R + A  E R+     + D++    ++T    + 
Sbjct: 231 LADTLR-EWG-VPAWSAASAPPAYYMRPLPAAFE-RDFVRTGYWDKFVSYATVTT---SD 284

Query: 433 APAAFNLMLFQNYKNRVDWTELQQCINF 516
           A A F LM+F N+K+ VDW +LQ    F
Sbjct: 285 ASATFALMVFDNFKSHVDWDQLQAAGRF 312


>UniRef50_Q9NYZ3 Cluster: G2 and S phase-expressed protein 1; n=15;
           Eutheria|Rep: G2 and S phase-expressed protein 1 - Homo
           sapiens (Human)
          Length = 720

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -3

Query: 318 GRGVKRSPFVNTLPVRM*RVHQPGYSSNTSM*SDHGMLWAINFSSCTRPSRKQYKMS 148
           G+G +  P  N L ++   +  PG +SN +  S  G +W+   S+CT P+  + K S
Sbjct: 279 GQGKRAIPVPNKLGLKKTLLKAPGSTSNLARKSSSGPVWSGASSACTSPAVGKAKSS 335


>UniRef50_Q4T9R3 Cluster: Chromosome undetermined SCAF7505, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF7505, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 409

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -2

Query: 586 VVKPRHCLQIDAGKRRSVQTPKFKN*CTVAVLS 488
           +V  RHCLQ  AG +RS+Q  K    CT AVL+
Sbjct: 38  LVSLRHCLQHPAGVQRSLQVTKVSWSCTGAVLA 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,516,012
Number of Sequences: 1657284
Number of extensions: 14044213
Number of successful extensions: 32095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32084
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)