Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120432.Seq
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568     30   2.1  
02_01_0056 - 419393-420208                                             28   8.5  

>01_05_0120 - 18349131-18349880,18349972-18350259,18350383-18350568
          Length = 407

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +2

Query: 56  HLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREGRVQELKLI 199
           H++  L+N +  ++    + +  +C  + + L+L  ++ G V  LKL+
Sbjct: 129 HIDNVLVNGSGTLDGQGAAVWKDECKILPNTLVLDYVKNGTVSGLKLV 176


>02_01_0056 - 419393-420208
          Length = 271

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 17  KQYIDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCVKI 139
           KQY+ Y  + +    +A L N+    E +++S  ++DC+ I
Sbjct: 28  KQYVYYSQLIRSIEHDAELQNEVFHTEKLHISKSVKDCINI 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,407,780
Number of Sequences: 37544
Number of extensions: 400308
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)