Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120432.Seq
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)              29   3.7  
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)                     28   6.5  
SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)              28   6.5  
SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)            28   6.5  
SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)                28   6.5  
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
          Length = 358

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 41  VFKYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLREG 175
           +   KH+N   + D    EN++ +  + +CVK +D L+     +G
Sbjct: 57  IINTKHMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQG 101


>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
          Length = 642

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 172
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 488 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 528


>SB_2049| Best HMM Match : Ribosomal_LX (HMM E-Value=0.98)
          Length = 731

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 50  YKHLNAALINDASCMENVNLSAYMQDCVKISDALILY 160
           YKHL A L  D  C E   +  ++Q  V   DAL +Y
Sbjct: 144 YKHLLACLGVDRVCAERHGVCGFLQFIVVTHDALRVY 180


>SB_43937| Best HMM Match : Lipoprotein_17 (HMM E-Value=8.4)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 172
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 151 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 191


>SB_20180| Best HMM Match : Aldedh (HMM E-Value=5.3e-08)
          Length = 266

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 280 KCIDKWTAFNAPPAYYIRHMFAHPEFRNEFEEKFNDQ 390
           +C++   AFN      ++ +F H +   EF +KF +Q
Sbjct: 35  ECVNGALAFNGQRCTALKILFVHEDIVEEFNQKFIEQ 71


>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 172
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 546 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 586


>SB_5694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1113

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 47  KYKHLNAALINDASCMENVNLSAYMQDCVKISDALILYCLRE 172
           ++++  + L+ND  CMEN  L +Y+Q      ++  L C R+
Sbjct: 643 EFENSFSELLNDDHCMENPTLVSYLQKLYNDKESFAL-CFRK 683


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,121,792
Number of Sequences: 59808
Number of extensions: 492077
Number of successful extensions: 1166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)