Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120432.Seq
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 210 MLWAINFSSCTRPSR 166
           +L+ +  SSCTRPSR
Sbjct: 7   LLFFLLLSSCTRPSR 21


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 210 MLWAINFSSCTRPSR 166
           +L+ +  SSCTRPSR
Sbjct: 7   LLFFLLLSSCTRPSR 21


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 238 KHEHVIRPRYAVGDQF 191
           +H+H++R   A+GD +
Sbjct: 109 RHKHIVRLVTAIGDAY 124


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 350 QSLEMSLKKSSMTNIGATNQLHRDYK 427
           Q +EM+LK   MT      Q   DYK
Sbjct: 69  QLIEMNLKNQVMTTNVWVEQRWNDYK 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,911
Number of Sequences: 438
Number of extensions: 4196
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)