Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120432.Seq
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    30   1.3  
At5g17910.1 68418.m02100 expressed protein                             29   4.0  
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ...    29   4.0  
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ...    28   7.1  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    27   9.3  
At2g39580.1 68415.m04855 expressed protein                             27   9.3  

>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -2

Query: 619 LNGVRMLSKVFVVKPRHCLQIDAGKRRSVQT-----PKFKN*CTVAVLSNRRDFCNFETA 455
           +NGVR+ SKVFV K    L+I++G  R +       PK K+     ++  + + C  +  
Sbjct: 91  VNGVRLPSKVFVSKSLVRLRIESGNVRGIDVDDVFLPKLKSLYLHTIMLGKGEDCFEKLT 150

Query: 454 SG 449
           SG
Sbjct: 151 SG 152


>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 579 NRGTACKSTRGNGALYKRLNSKID 508
           N GT  + +R NG+LY+R++ ++D
Sbjct: 198 NDGTGAEQSRTNGSLYERMDDQMD 221


>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 252

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -3

Query: 249 GYSSNTSM*SDHGMLWAINFSSCTRPSRKQYKMSASLILTQSCMYADKLTFSIQLASFIS 70
           G SS  +   D+  +WAIN      PS+K    S+S I      +  KL F  +  +   
Sbjct: 30  GDSSVWATEDDYSRVWAINSDGAESPSKKTRSSSSSEI--GKSFFKTKLCFKFRAGTCPY 87

Query: 69  AAFKCLYLNT 40
           +A  C + ++
Sbjct: 88  SASSCHFAHS 97


>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 499

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  IDYDYVFKYKHLNAALINDASCMENVNLSAYMQDCV 133
           +D D V  YKHL  + +ND S  +   +  Y Q  +
Sbjct: 290 VDKDIVAPYKHLVPSYVNDTSGFDGRPILLYFQGAI 325


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +2

Query: 5   KEPIKQYIDYDYVFK-YKH-LNAALINDASCMEN 100
           KE + +Y  + Y F  YK+ L+A LIN+ SC+ N
Sbjct: 481 KESLPKYWLFMYFFSMYKYALDALLINEYSCLHN 514


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 321  RGRGVKRSPFVNTLPVRM*RVHQPGYSSNTSM*SDHGMLWAINFSSCTRPSRKQYK 154
            +G  +  S F  T  V +  +    +S  + +   HG +W  +FS+C   S   Y+
Sbjct: 859  KGSQILDSVFSPTYLVSLDTMKVDSWSYESVLAQRHGQIWCKHFSACLASSNSLYR 914


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,943
Number of Sequences: 28952
Number of extensions: 317428
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)