Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120431X.Seq
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   1.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.6  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   5.0  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   5.0  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   5.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 ALAERMRRELAKFRDSRWEDN 250
           +    +  E AKF +S+W+D+
Sbjct: 99  SFGNNLHSEKAKFNESKWQDS 119


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 129 SSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTTF 16
           SSP  NV PLTPS    S H       G  +P  S ++
Sbjct: 108 SSPSGNVPPLTPSPGPPS-HPYTVISNGYSSPMSSGSY 144


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 171 SGKPVNQFTTNLASSSPLLN 112
           SGKP    +TN +  SP+L+
Sbjct: 121 SGKPSGVISTNTSPPSPILS 140


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 230 DSRWEDNWARAPRR 271
           DS+W  +WA AP R
Sbjct: 253 DSQWLAHWAFAPIR 266


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 298 RGPRFSFQRSSWRACPVI 245
           RGP F   R SW++  V+
Sbjct: 39  RGPDFRSLRFSWKSARVV 56


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 298 RGPRFSFQRSSWRACPVI 245
           RGP F   R SW++  V+
Sbjct: 39  RGPDFRSLRFSWKSARVV 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,023
Number of Sequences: 336
Number of extensions: 1576
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)