Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120431X.Seq
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    55   7e-09
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.32 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.42 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   1.3  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.7  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   2.2  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   2.9  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   5.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   9.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.0  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   9.0  
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   9.0  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 30/84 (35%), Positives = 42/84 (50%)
 Frame = +2

Query: 2   LDLPMKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPE 181
           LDLPMKVVD+FG G+PV A ++  + ELV DG NG        L+K +    T   +   
Sbjct: 336 LDLPMKVVDLFGCGVPVIALSYPTISELVHDGENGLIVNDSKALSKKMQYLLTHANE--- 392

Query: 182 QIALAERMRRELAKFRDSRWEDNW 253
                  ++    K  + RW+D W
Sbjct: 393 ----LNSLKLGALKESEYRWDDEW 412


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 159 VNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTTFIGRSS 1
           VN  T   ASS+PL +V   T +S SS+    + + T   A +   T +  +S
Sbjct: 444 VNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTS 496



 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 159 VNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTT 19
           VN  TT  ASS+PL +V     ++ +S+    L +     A + S+T
Sbjct: 311 VNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST 357



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 156 NQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTT 19
           N  T   ASS+PL +V   T +S SS+    + +     A + S+T
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTSST 341



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 156 NQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTTFIGRSS 1
           N  T   ASS+PL +V   T +S SS+    + + T   A +   T +  ++
Sbjct: 429 NSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNSTT 480



 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 159 VNQFTTNLASSSPLLNVKPLTPSSTSSS 76
           VN  T   ASS+PL +V   T +S SS+
Sbjct: 346 VNSTTATSASSTPLTSVNSTTATSASST 373



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 159 VNQFTTNLASSSPLLNVKPLTPSSTSSS 76
           VN  T   ASS+PL +V   + +S SS+
Sbjct: 362 VNSTTATSASSTPLTSVNSTSATSASST 389



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 159 VNQFTTNLASSSPLLNVKPLTPSSTSSS 76
           VN  T   ASS+PL +V   + +S SS+
Sbjct: 476 VNSTTATSASSTPLTSVNSTSATSASST 503



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 156 NQFTTNLASSSPLLNVKPLTPSSTSSS 76
           N  T   ASS+PL +V   T +S SS+
Sbjct: 543 NSTTATSASSTPLTSVNSTTATSASST 569


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 286 FSFQRSSWRACPVILP--ARVPELGELAAHPLGERDLLGVVGEAGEPVHDQFGE 131
           F  + SS  A P+ LP  +  PE  + AA  L E D+  + GEA + V D+ GE
Sbjct: 17  FESENSSLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALD-VEDEEGE 69


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 168 GKPVNQFTTNLASSSPLLNVKPLTPSS 88
           GKP    TT+ + + PL   KP  PS+
Sbjct: 375 GKPATDTTTSTSKTGPLFGNKPADPSA 401


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 156 NQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMS 25
           + F T + SSS  ++   +TPSS+SSS   ++ + T   A N S
Sbjct: 238 SSFITTM-SSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +2

Query: 158 TGFPDNPEQIALAERMRRELAKFRDSRWEDNWARAPRRSLKTEAGATPSCDFD 316
           T  P   +   L  +    ++KF   +W +N   A R+ L+ E     S  FD
Sbjct: 36  TSSPALKDTQVLDNKENNSVSKFNKEKWAENLTPAQRKLLQLEIDTLESSWFD 88


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 199  LGERDLLGVVGEAGEPVHDQFGELVAALEREAVDAVLHQLVQAQEVE 59
            L  +D+L ++G AG P  D +GE +       +   L  + Q   +E
Sbjct: 883  LSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIE 929


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 120 LLNVKPLTPSSTSSSRHRKL 61
           L+N++P+ PSS  S RH  L
Sbjct: 346 LVNMRPINPSSFVSDRHSPL 365


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSS 76
           GL     ++ T +L+  SP+   KP  P +TSSS
Sbjct: 401 GLRNVSGSERTKSLSKESPVEPEKPALPDATSSS 434


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 153 QFTTNLASSSPLLNVKPLTPSSTSSS 76
           Q T  L S  PL++  P+TP+S  S+
Sbjct: 347 QITPRLDSVVPLISDSPMTPNSVYSN 372


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
 Frame = -1

Query: 301 GRGPRFSFQRSSWRACPVILPARVP----ELGELAAHPLGERDLLGVVGEAGEPVHD--Q 140
           G+GP   F   SWR     L   VP     LG L A     R   GV  +  +   D  Q
Sbjct: 645 GKGPGCGFWAPSWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSTGVAKQITKQRVDSHQ 704

Query: 139 FGELVAALEREAVDAV 92
             EL AA+  + +D +
Sbjct: 705 DLELRAAVMNDILDMI 720


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -2

Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTTFIGRS 4
           G +G P N    +LAS+       P  P++  S  +R L        PNM  + + +S
Sbjct: 288 GFNGSPRNGDVASLASNYRYAKQPPTMPANAISQANRLLDQNN---IPNMDPSILPQS 342


>SPBP16F5.08c |||flavin dependent monooxygenase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 19 SRGHVWSWSSRLRLQLPVP 75
          S G VW+++S L  +LPVP
Sbjct: 42 SPGGVWNYTSTLSNKLPVP 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,137
Number of Sequences: 5004
Number of extensions: 29514
Number of successful extensions: 131
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)