Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120431X.Seq
(520 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 78 4e-15
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 78 5e-15
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 30 1.3
03_01_0481 - 3683912-3684694,3684811-3685107,3685199-3685414,368... 30 1.3
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 29 2.2
02_05_1118 + 34241819-34242217,34242350-34242522,34243499-342436... 29 2.2
07_01_1164 - 11016314-11017688,11019144-11019181 27 6.8
01_07_0224 - 42121011-42122486 27 6.8
04_01_0409 - 5409018-5410268 27 9.0
04_01_0224 - 2830669-2830969,2831049-2831219,2831302-2832134,283... 27 9.0
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 78.2 bits (184), Expect = 4e-15
Identities = 40/86 (46%), Positives = 49/86 (56%)
Frame = +2
Query: 2 LDLPMKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPE 181
LDLPMKVVDMFG GLPVCA +F C+DELV+ NG F + ELA + F GFP+ +
Sbjct: 322 LDLPMKVVDMFGCGLPVCAASFSCIDELVKVNNNGLLFSTSSELADELTMLFKGFPEECD 381
Query: 182 QIALAERMRRELAKFRDSRWEDNWAR 259
+ L L S+W W R
Sbjct: 382 E--LKSLKVGALNTGSSSKWSTEWER 405
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 77.8 bits (183), Expect = 5e-15
Identities = 40/86 (46%), Positives = 49/86 (56%)
Frame = +2
Query: 2 LDLPMKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPE 181
LDLPMKVVDMFG GLPVCA +F C+DELV+ NG F + ELA ++ F GFP+ +
Sbjct: 360 LDLPMKVVDMFGCGLPVCAASFSCIDELVKINNNGLLFSTSSELADELMMLFKGFPEECD 419
Query: 182 QIALAERMRRELAKFRDSRWEDNWAR 259
L L S+W W R
Sbjct: 420 D--LKSLKVGALNTGSSSKWSTEWER 443
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = -1
Query: 196 GERDLLGVVGEAGEPVHDQFG--ELVAALEREAVD---AVLHQLVQAQEVEGANGKTSSK 32
GERD + ++G++G P H G +VAA E + + + H + + +G ++
Sbjct: 209 GERDNVALMGQSGAPSHSATGGRSIVAAAEIHSTNSRKSFRHDGLDILAQDDVHGPSNGV 268
Query: 31 HVHDF 17
VHD+
Sbjct: 269 AVHDY 273
>03_01_0481 -
3683912-3684694,3684811-3685107,3685199-3685414,
3685503-3685829
Length = 540
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 77 DELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPEQIALAERMRRELAKFRDSR 238
D+ + D V F D A ++WFT A+A+++RRELA F D R
Sbjct: 307 DKSLRDVVLNFVIAGRDTTAT-TLSWFTYMAMTHP--AVADKLRRELAAFEDER 357
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 14 MKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFK--SGDELAKLVVNWFTGFPDNP 178
+ VV+ GLP A + E++ +GV+GF GD+ + L+V +F ++P
Sbjct: 682 LTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDP 738
>02_05_1118 +
34241819-34242217,34242350-34242522,34243499-34243660,
34243762-34243903,34244320-34244544,34244649-34244711,
34244817-34244891,34245198-34245404,34247274-34247465,
34247515-34247634
Length = 585
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 11 PMKVVDMFGAGLPVCAFNFLCLDEL------VEDGVNGFTFKSGDELAKLVVNWFTGFPD 172
P + + GLP+ +F+ E+ V++G F+ KS E AKLV WF PD
Sbjct: 391 PGTIAEALIRGLPIILNDFIPGQEVGNVPYVVDNGAGVFS-KSSRETAKLVARWFG--PD 447
Query: 173 NPEQIALAER 202
+ E ++E+
Sbjct: 448 SDELKRMSEK 457
>07_01_1164 - 11016314-11017688,11019144-11019181
Length = 470
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 329 NESRDRSRTRAWPPLQFSKIFLARVPSY 246
NE DR+ R WPPLQ + F P +
Sbjct: 352 NEVIDRNIMRDWPPLQLTIAFAPHQPHH 379
>01_07_0224 - 42121011-42122486
Length = 491
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 326 ESRDRSRTRAWPPLQFSKIFLARVPSYPPSASPG 225
E R R TR W L S++ R+ PP PG
Sbjct: 140 EERIRPYTRKWEALIMSRVEEVRLRMAPPEEEPG 173
>04_01_0409 - 5409018-5410268
Length = 416
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 41 GLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDN 175
G P+ FLC + +EDG++ F+ L ++ F GF D+
Sbjct: 24 GSPLRTLQFLCTLKEIEDGISFRFFRKEFTLTWKGLSTFLGFHDS 68
>04_01_0224 -
2830669-2830969,2831049-2831219,2831302-2832134,
2832216-2832677,2832756-2833489,2833578-2833707
Length = 876
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 129 SSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNM 28
++P + + P TS S+HR A T PAP +
Sbjct: 397 TTPAVQLTPRVQHDTSPSQHRSSCASTEVPAPGL 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,588,169
Number of Sequences: 37544
Number of extensions: 214811
Number of successful extensions: 953
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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