Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120431X.Seq
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17) 31 0.43
SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08) 31 0.43
SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097) 31 0.43
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_44676| Best HMM Match : Bim_N (HMM E-Value=0.83) 31 0.75
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_51263| Best HMM Match : ADC (HMM E-Value=3) 29 2.3
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_31674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_15074| Best HMM Match : PID (HMM E-Value=0.00012) 28 5.3
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06) 28 5.3
SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09) 27 7.0
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 27 7.0
SB_33575| Best HMM Match : PAN (HMM E-Value=0.00074) 27 7.0
SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.3
SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30) 27 9.3
>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
Length = 1590
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ + S N P +PS ++ S ++ K + PAP+
Sbjct: 207 GILEKPINQVIAVVESKEMARNALPPSPSLSAVSSFQRQKTNSPHPAPS 255
>SB_34394| Best HMM Match : RVT_1 (HMM E-Value=8.7e-08)
Length = 1201
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ + S N P +PS ++ S ++ K + PAP+
Sbjct: 222 GILEKPINQVIAVVESKEMARNALPPSPSLSAVSSFQRQKTNSPHPAPS 270
>SB_27735| Best HMM Match : Retrotrans_gag (HMM E-Value=0.097)
Length = 812
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ + S N P +PS ++ S ++ K + PAP+
Sbjct: 207 GILEKPINQVIAVVESKEMARNALPPSPSLSAVSSFQRQKTNSPHPAPS 255
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 30.7 bits (66), Expect = 0.75
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ + S N P +PS + S ++ K PAP+
Sbjct: 207 GILEKPINQVVAVVESKEMARNALPPSPSLSGVSSFQRQKTNPPHPAPS 255
>SB_44676| Best HMM Match : Bim_N (HMM E-Value=0.83)
Length = 253
Score = 30.7 bits (66), Expect = 0.75
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ + S N P +PS ++ S ++ K PAP+
Sbjct: 84 GILEKPINQVIAVVESKEMARNALPPSPSLSAVSSFQRQKTNPPHPAPS 132
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 165 KPVNQFTTNLASSSPLLNVKPLTPSST----SSSRHRKLKAQTGRPAPNMSTTFIGRSS 1
KP N ++N S++P N KP PSS + S + K + P PN T++ R S
Sbjct: 198 KPNNP-SSNPKSNNPSSNPKPNNPSSNPKPNNPSSNPKSNNPSSNPKPNNPGTYLNRKS 255
>SB_51263| Best HMM Match : ADC (HMM E-Value=3)
Length = 220
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 199 LGERDLLGVVGEAGEPVHDQFGELVAALEREAVDAVLHQLVQAQEVE 59
LG D+L + G AG P D+FGE + + L L + +E
Sbjct: 71 LGILDVLQIFGRAGRPQFDKFGEGTIITAHDRLSHYLSLLTRQAPIE 117
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPN 31
G+ KP+NQ T + S N P +PS ++ S + K AP+
Sbjct: 207 GILEKPINQVITVVESKEMARNALPPSPSLSAVSSFERQKTNPPHTAPS 255
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 177 GLSGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRP 40
GLS P N ++ S +P P PSS SSR R +++ T P
Sbjct: 888 GLSSDPGNWYSPARRSKTP----SPRPPSSRPSSRRRNMESFTKNP 929
>SB_31674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 173 NPEQIALAERMRRELAKFRDSRWEDNWARAPRRSLKTEAGATPS 304
N + ALA + ELAK + RW +N + + + AGA PS
Sbjct: 26 NEDDKALA--ISGELAKIMNDRWPNNLSDEKQERKRESAGARPS 67
>SB_15074| Best HMM Match : PID (HMM E-Value=0.00012)
Length = 1153
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 147 TTNLASSSPLLNVKPLTPSSTSS 79
TT L+ +PL++V +TP+S SS
Sbjct: 109 TTQLSQETPLIHVTSITPTSVSS 131
>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
Length = 799
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 227 RDSRWEDNWARAPRRSLKTEAGATPSCD 310
RD +W AP RS K G T +CD
Sbjct: 82 RDGEKMTSWGGAPSRSNKCACGVTGTCD 109
>SB_38710| Best HMM Match : 7tm_1 (HMM E-Value=4.6e-09)
Length = 435
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 236 RWEDNWARAPRRSLKT-EAGATPSCDFDL*THSANKLN 346
RW AR R L + E G+TP D D +SA LN
Sbjct: 397 RWPSVLARQRMRPLTSAETGSTPGRDIDSSCYSAQNLN 434
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 175 VVGEAGEPVHDQFGELVAALEREAVDAVLHQLVQAQEVEGANGK 44
VVG GE V + GELV + E E V + +LV ++E E G+
Sbjct: 182 VVGRGGELVVSREGELVVSREGELVVSREGELVVSREGELVFGR 225
Score = 27.1 bits (57), Expect = 9.3
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = -1
Query: 220 GELAAHPLGERDLLGVVGEAGEPVHDQFGELVAALEREAVDAVLHQLVQAQEVE 59
GEL GE VVG GE V + GELV + E E V + +LV ++E E
Sbjct: 163 GELVVSREGEL----VVGRGGELVVGRGGELVVSREGELVVSREGELVVSREGE 212
>SB_33575| Best HMM Match : PAN (HMM E-Value=0.00074)
Length = 328
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 227 RDSRWEDNWARAPRRSLKTEAGATPSCD 310
RD +W AP RS K G T +CD
Sbjct: 246 RDGEKMTSWGGAPLRSNKCACGVTGTCD 273
>SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 215 LAKFRDSRWEDNWARAPRRSLKTEAGATPS 304
L KF + NWARA ++ K++ GA S
Sbjct: 21 LKKFGEMHLRKNWARATEKAGKSKLGAVSS 50
>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 931
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 56 AFNFLCLDELVEDGVNGFTFKSGDE--LAKLVVNWFTGFPDNPEQIALAERMRREL 217
AF + +GV+ + G E AKLV+ P PE +++ ER E+
Sbjct: 352 AFTYYMFRVYARNGVSDQAERGGQEAEFAKLVIRTRDAVPGKPEIVSITERSPTEV 407
>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
Length = 679
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 56 AFNFLCLDELVEDGVNGFTFKSGDE--LAKLVVNWFTGFPDNPEQIALAERMRREL 217
AF + +GV+ G E AKLV+ P PE +++ ER E+
Sbjct: 375 AFTYYMFRVYARNGVSDQAKSGGQEAEFAKLVIQTHDAVPGKPEIVSITERSPTEV 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,702
Number of Sequences: 59808
Number of extensions: 214439
Number of successful extensions: 871
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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