Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120431X.Seq
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    79   2e-15
AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondria...    33   0.16 
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr...    28   3.5  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    28   3.5  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 35/87 (40%), Positives = 54/87 (62%)
 Frame = +2

Query: 2   LDLPMKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPE 181
           LDLPMKVVDMFGA +P  A  F C+DELVE+  NG+ F   ++L++ ++    GFP+N  
Sbjct: 356 LDLPMKVVDMFGAKVPALALKFKCIDELVEEKTNGYLFDDSEQLSRQIIELSRGFPNNCN 415

Query: 182 QIALAERMRRELAKFRDSRWEDNWARA 262
           ++    R+++   + +   WE  W R+
Sbjct: 416 ELI---RLKKNTQEQKFDSWEVMWKRS 439


>AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondrial
           processing peptidasealpha protein 1 protein.
          Length = 477

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 286 FSFQRSSWRACPVILPARVPELGELAAHPLG 194
           F   +S+W   P +LPA++PE+ E  A   G
Sbjct: 223 FDLNKSTWTTQPTVLPAKIPEIDESRAQYTG 253


>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical protein
            W10C6.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 295  GPRFSFQRSSWRACPVILPARVPELGELAAHPLGERDLLG--VVGEAGEPVHDQFGELVA 122
            G  F    + + A  + LP  + EL  L    +  R L    V+ ++ EP HD    L+ 
Sbjct: 966  GMMFMKMNNEFIANALALPGTITELERLKPDSMYSRVLAQCLVMWDSIEPTHDFVKSLIP 1025

Query: 121  ALEREAVDAVLH 86
             + RE   A LH
Sbjct: 1026 PVIREYATAALH 1037


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = -1

Query: 154 PVHDQFGELVAALEREAVDAVLHQLVQAQEVEGANGKTSSKHVHDFHW 11
           P H   G  V A          HQLV   +VE    K    H  DF W
Sbjct: 223 PCHKSAGPKVPACGAIDCPTNAHQLVDISKVEHLGTKVFHPHFPDFEW 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,132
Number of Sequences: 27780
Number of extensions: 163276
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)