Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120431X.Seq
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    82   3e-16
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    29   1.9  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    29   2.5  
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)...    28   4.3  
At5g65170.1 68418.m08197 VQ motif-containing protein contains PF...    27   5.7  
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    27   5.7  
At1g77720.1 68414.m09049 protein kinase family protein contains ...    27   5.7  
At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P241...    27   7.6  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   7.6  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 40/84 (47%), Positives = 49/84 (58%)
 Frame = +2

Query: 2   LDLPMKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPE 181
           LDLPMKVVDMFG GLPVC+ ++ C+ ELV+DG NG  F S  ELA  ++  F GFP N +
Sbjct: 366 LDLPMKVVDMFGCGLPVCSVSYSCIQELVKDGKNGLLFSSSSELADQLLILFKGFPGNCD 425

Query: 182 QIALAERMRRELAKFRDSRWEDNW 253
             AL       +      RW   W
Sbjct: 426 --ALMSLKAGAMETGSSGRWATEW 447


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  LVEDGVNGFTFKSGDELAKLVVNWFTGFPDNPEQIALAERM 205
           LV+ G+NG T  + + ++  V   F G PD+ E +A A RM
Sbjct: 609 LVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRM 649


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 14  MKVVDMFGAGLPVCAFNFLCLDELVEDGVNGFTF--KSGDELAKLVVNWFT 160
           + V++    GLP  A N     E++ DGV+GF     +GDE    + ++F+
Sbjct: 684 LTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPNNGDESVTKIGDFFS 734


>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
           (FAS1) identical to FAS1 [Arabidopsis thaliana]
           GI:4887626
          Length = 815

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 164 FPDNPEQIALAERMRRELAKFRDSRWEDNWARAPRRSLKTEAGATPSCD 310
           FPD P+   L +++R E++ F DSRW+       ++ + T+ G +PS D
Sbjct: 734 FPDVPKT-KLRQKVR-EISDFEDSRWQ------VKKEVLTKLGLSPSPD 774


>At5g65170.1 68418.m08197 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 362

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 171 SGKPVNQFTTNLASSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTTFIGRS 4
           S +P+  F   L S S L N   L PSS     H+          PN+S  F+  S
Sbjct: 198 SSRPMKPFPHKLISPSTL-NHHYLPPSSEYHHHHQHQNLLLNMNTPNISNPFLNNS 252


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 229 PELGELAAHPLGERDLLGVVGEAGEPVHDQFGE 131
           PE GE     L   D++ ++G AG P +DQ GE
Sbjct: 861 PERGEWME--LSPLDVMQMIGRAGRPQYDQQGE 891


>At1g77720.1 68414.m09049 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 777

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = -2

Query: 123 PLLNVKPLTPSSTSSS------RHRKLKAQTGRPAPNMSTTFIG 10
           P+LN++  + SS+SSS      RH +   +  RP   M TT IG
Sbjct: 21  PILNLETTSSSSSSSSSSPELLRHLQAAFKRHRPLSKMQTTSIG 64


>At5g44140.1 68418.m05402 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family; non-consensus TT acceptor
           splice site at exon 2
          Length = 278

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 235 RVPELGELAAHPLGERDLLGVVGEAGEPVHDQFGELVAALEREAVDAVLHQLV 77
           R+PE+        GER L  ++ E  + V  Q+       +REAV   + ++V
Sbjct: 111 RLPEIYRTLGQNYGERVLPSIINETLKAVVAQYNASHLITQREAVSREIRKIV 163


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 132 SSSPLLNVKPLTPSSTSSSRHRKLKAQTGRPAPNMSTT 19
           S+SP+  VK  +PSS S S  ++ K + G  +   ST+
Sbjct: 180 SNSPINGVKQSSPSSISKSASKRDKDERGSTSSATSTS 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,942,867
Number of Sequences: 28952
Number of extensions: 160920
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)