Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120430.Seq
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28289| Best HMM Match : Adeno_E4_34 (HMM E-Value=4.5)               30   1.5  
SB_27870| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  28   8.2  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   8.2  
SB_6690| Best HMM Match : CC (HMM E-Value=2.9)                         28   8.2  

>SB_28289| Best HMM Match : Adeno_E4_34 (HMM E-Value=4.5)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
 Frame = +3

Query: 141 LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMKILIPYSSSMAFTNLVDT---- 308
           L   IH    T+  V+  I+  RH +  + + VN+ L+++LI   S    T+ V+     
Sbjct: 5   LPGFIHNSVKTSMRVQFVIAILRHSMYRFSHAVNNTLLQMLILRHSIYRLTHAVNNTLLQ 64

Query: 309 ---LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 422
              L ++++R + T       +   RH +    + VN+ L+
Sbjct: 65  MLILRHSMYRLSHTVNNTLLQMLILRHSMYRLTHAVNNTLL 105


>SB_27870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
 Frame = +3

Query: 141 LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMKILIPYSSSMAFTNLVDT---- 308
           L   IH    T+  V+  I+  RH +  + + VN+ L+++LI   S    T+ V+     
Sbjct: 5   LPGFIHNSVKTSMRVQFVIAILRHSMYRFSHAVNNTLLQMLILRHSIYRLTHAVNNTLLQ 64

Query: 309 ---LANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLM 422
              L ++++R + T       +   RH +    + VN+ L+
Sbjct: 65  MLILRHSMYRLSHTVNNTLLQMLILRHSMYRLTHAVNNTLL 105


>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 170 NGSPSGNRHQQFPSQASTLPISGKFQAHEN 259
           NG+ S    Q FP+  +  P+SG  Q  EN
Sbjct: 190 NGTMSSTSTQAFPAALNETPLSGAVQTSEN 219


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 499 SPTHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDI 615
           SP  PP++++G+P  +      S +S+   SG    H +
Sbjct: 392 SPRTPPQQYSGTPHSSLQGSRTSYSSSTSFSGNSSTHSV 430


>SB_6690| Best HMM Match : CC (HMM E-Value=2.9)
          Length = 183

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 502 PTHPPRRHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQ 633
           P+ PP++++ +PS N H    S   T P         + +  SQ
Sbjct: 98  PSKPPKQNSQAPSTNAHPGHVSSTLTKPTEASRARQSVGSSASQ 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,278,760
Number of Sequences: 59808
Number of extensions: 414049
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)