Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120430.Seq
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    29   4.1  
Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 488  SRHSRQHIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT 613
            S H R+ I +D +T  ++E  I   +  L  +  Q+N   +T
Sbjct: 998  SSHQRESILKDQLTRMIIENKIKELKRTLATFDGQINEDRIT 1039


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 488  SRHSRQHIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT 613
            S H R+ I +D +T  ++E  I   +  L  +  Q+N   +T
Sbjct: 984  SSHQRESILKDQLTRMIIENKIKELKRTLATFDGQINEDRIT 1025


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 488  SRHSRQHIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMT 613
            S H R+ I +D +T  ++E  I   +  L  +  Q+N   +T
Sbjct: 984  SSHQRESILKDQLTRMIIENKIKELKRTLATFDGQINEDRIT 1025


>Z50797-3|CAC35828.1|  802|Caenorhabditis elegans Hypothetical
           protein T22H6.2b protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 153 IHRDAITAPLVETAISNFRHK-LQLYPYQVNSKLMKILIPYSSSMAF 290
           IH+D  TAP  ++  S F+ + ++L+     + L+K   P + SM+F
Sbjct: 616 IHKDLATAPFFDSLCSMFKAEGVKLHAGPKLAALLKFAPPPAESMSF 662


>Z50797-2|CAA90672.1|  800|Caenorhabditis elegans Hypothetical
           protein T22H6.2a protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 153 IHRDAITAPLVETAISNFRHK-LQLYPYQVNSKLMKILIPYSSSMAF 290
           IH+D  TAP  ++  S F+ + ++L+     + L+K   P + SM+F
Sbjct: 614 IHKDLATAPFFDSLCSMFKAEGVKLHAGPKLAALLKFAPPPAESMSF 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,796
Number of Sequences: 27780
Number of extensions: 314100
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)