Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120430.Seq
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   4.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 499 SPTHPPRRHN-GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 624
           SP +P +    G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 38  SPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +2

Query: 341 GSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP----GFCA*HGFHQFSRHSRQH 508
           G P G    Q PSQ    P SG  Q   +  QQ  L P     F   H  +   +  +QH
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQL-LQQHILSPTQLQSFMQQHSLY-LQQQQQQH 106

Query: 509 IHRDA 523
            H+D+
Sbjct: 107 -HQDS 110



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 173 GSPSGNRHQQFPSQASTLPISGKFQAHENL 262
           G P G    Q PSQ    P SG  Q  + L
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLL 78


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 649 RSQGQADFVGCLCHELGIYLIWVK 578
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 461 RSQGQADFVGCLCHELGIYLIWVK 390
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 RSQGQADFVGCLCHELGIYLIWVK 33
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,736
Number of Sequences: 438
Number of extensions: 3693
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)