Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120430.Seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   2.9  
At5g04970.1 68418.m00526 pectinesterase, putative contains simil...    28   6.7  
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 132 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLMKIL 263
           + ++ N I +DA  A L +  + N    L+L PY   +K M +L
Sbjct: 304 IQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLL 347


>At5g04970.1 68418.m00526 pectinesterase, putative contains
           similarity to pectinesterase from Vitis vinifera
           GI:15081598, Prunus persica SP|Q43062; contains Pfam
           profile PF01095 pectinesterase
          Length = 624

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 457 LLRLAWLSPI*STLSPTHPPRRHNGSPSGNRHQQFPSQASTLP 585
           LL L+W   +  T  P+ PP      PS     Q PSQ  T P
Sbjct: 13  LLCLSWALLVSPTRPPSQPPSHPPIQPSSQPPTQPPSQPPTQP 55


>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 525

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 153 IHRD-AITAPLVETAISNFRHKLQLYPYQVNSKLMKILIPYSSSMAFTNLVDTLANTIHR 329
           IH D A T P +    +  R  + ++P    S+ + I    SSS   + +    +    R
Sbjct: 119 IHDDPAATEPTLPRQKTK-RVTINVHPQSAVSREVVITKAGSSSRGTSRISHPKSELGTR 177

Query: 330 DAITAPLVETAISNFRHKLQ 389
           DA+T P V T+  N  H ++
Sbjct: 178 DALTGPSVSTSSGNSEHTVR 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,708
Number of Sequences: 28952
Number of extensions: 306361
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)