Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120428.Seq
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48285| Best HMM Match : Torsin (HMM E-Value=0)                      35   0.062
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               29   4.1  
SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  

>SB_48285| Best HMM Match : Torsin (HMM E-Value=0)
          Length = 636

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 27  VRRYNRRVIDFAGIRNKTLEIIKTDRN-LPLNTECNVKAVDSACMRCRRSFAVYPAVTYL 203
           V++Y R   DF+   ++   + K  +   P    C+ K+    C+    +FA+     YL
Sbjct: 293 VKKYKRSSADFSEDEDQLQTVPKNPKQQTPQQVVCHKKSNRLLCVFMTVAFAIALGSVYL 352

Query: 204 HCGHSCLCTDCDETVNVT 257
           H     LC D + T N+T
Sbjct: 353 HLNPHGLCLDGEFTANLT 370


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 138 AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDET 245
           A  + C  C+  F+    + Y   G H C+C +C+ET
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNET 261


>SB_13976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 236 RRNGKRDNTCPKCKSGIRYKLKYKTL*HVALRNGDFRV 349
           +R  + D T  K    IRY  + K + H+ +RN D  V
Sbjct: 576 QRKNRHDMTYEKMSRAIRYYYERKIIKHILVRNADTEV 613


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,383,621
Number of Sequences: 59808
Number of extensions: 451777
Number of successful extensions: 1321
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)