Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120428.Seq
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.5  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTHD
Sbjct: 66  NKLWKPDILMYNSADEGFDGTYQTSVVVTHD 96


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = -1

Query: 140 SLHIAFCVERQVSVGLNDFQRFVANARKVNYTSVVAPHREHL 15
           ++ +  C    +++      R++A  R V+Y  +++P R  L
Sbjct: 143 AVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARL 184


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 216 SCLCTDCDE 242
           SC C DCDE
Sbjct: 325 SCSCLDCDE 333


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTH+
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 521 NFLTKKIINVYNKTEMCIRATFDGRYVVTHD 613
           N L K  I +YN  +     T+    VVTH+
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHN 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,377
Number of Sequences: 438
Number of extensions: 3662
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)