Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120428.Seq
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47050.1 68418.m05798 expressed protein 33 0.21
At4g19700.1 68417.m02893 expressed protein 31 1.1
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ... 31 1.1
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 31 1.1
At1g60610.2 68414.m06823 expressed protein 30 1.5
At1g60610.1 68414.m06822 expressed protein 30 1.5
At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low s... 29 2.5
At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low s... 29 2.5
At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low s... 29 2.5
At4g35070.1 68417.m04978 expressed protein 29 3.4
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 29 3.4
At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH) domain... 29 3.4
At5g45100.2 68418.m05534 expressed protein 29 4.4
At5g45100.1 68418.m05533 expressed protein 29 4.4
At3g12920.1 68416.m01610 expressed protein 28 5.9
At2g39810.1 68415.m04890 expressed protein 28 7.7
At1g79110.2 68414.m09225 expressed protein 28 7.7
At1g79110.1 68414.m09224 expressed protein 28 7.7
>At5g47050.1 68418.m05798 expressed protein
Length = 300
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 132 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVTIRVLNVK 278
V+ + C CRR A V L C H +CT+CD +V + L+ K
Sbjct: 246 VEMIGPGCRICRRRSAT---VLALPCRHLVMCTECDGSVRICPLCLSTK 291
>At4g19700.1 68417.m02893 expressed protein
Length = 304
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +3
Query: 132 VKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC 236
V AV C RC A +V L C H CLCT C
Sbjct: 247 VTAVGGGCKRCGEREA---SVLVLPCRHLCLCTVC 278
>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 470
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = +2
Query: 131 CEGCRQCMHALQKKFRSLPRRYLSALRTFVFVHRLRRNGKRDNTCPKCK---SGIRYK 295
C C +C + L K SLPR+ L ++ D C C+ +G RYK
Sbjct: 224 CYKCVECDYILHKACASLPRKKRHLLHNHKLTLQVDEAASSDFVCTACRTYSNGFRYK 281
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 140 CRQCMHALQKKFRSLPRRYLSALRTFVFVHRLRR---NGKRDNTCPKCKSGIRYKLKY 304
C QC L K+ SLPRR S L R++ N + +C K G RYK +
Sbjct: 289 CVQCEFFLHKECASLPRRKRSILHIDKLDLRVKNKAGNHYKCRSCQKLFDGFRYKTTF 346
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 129 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 239
N+ + S MRC+ +V + C H LC DCD
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCD 318
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 129 NVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 239
N+ + S MRC+ +V + C H LC DCD
Sbjct: 282 NIPGMPSTGMRCKLCNVKNVSVLLVPCRHLSLCKDCD 318
>At5g11010.3 68418.m01286 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +3
Query: 327 YEMVISVLVYLSPAQILNLNLPLAYQKSV 413
YE+++ VL Y+SP+ ++ +N+ AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185
>At5g11010.2 68418.m01285 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 368
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +3
Query: 327 YEMVISVLVYLSPAQILNLNLPLAYQKSV 413
YE+++ VL Y+SP+ ++ +N+ AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185
>At5g11010.1 68418.m01284 pre-mRNA cleavage complex-related low
similarity to SP|Q92989 Pre-mRNA cleavage complex II
protein Clp1 {Homo sapiens}
Length = 318
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +3
Query: 327 YEMVISVLVYLSPAQILNLNLPLAYQKSV 413
YE+++ VL Y+SP+ ++ +N+ AY K++
Sbjct: 158 YELLVDVLRYVSPSHVVKINIS-AYNKNL 185
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 141 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDE 242
+ S C C + V +L C H C C DC+E
Sbjct: 213 MSSCCCNCGSNGVT--RVLFLPCRHLCCCMDCEE 244
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +3
Query: 30 RRYNRRVIDFAGIRNKT-LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLH 206
R+ +RV+D A R + E R ++ AV C+ C Y AV ++
Sbjct: 254 RQLQKRVLDAAAKRAELESEGSNGTRESISDSTKKEDAVPDLCVICLEQ--EYNAV-FVP 310
Query: 207 CGHSCLCTDC 236
CGH C CT C
Sbjct: 311 CGHMCCCTAC 320
>At1g14910.1 68414.m01782 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Chain A, Calm-N N-Terminal Domain Of Clathrin
Assembly Lymphoid Myeloid Leukaemia Protein, Pi(4,5)p2
Complex (GP:13399999) {Homo sapiens}
Length = 692
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 149 CMHALQKKFRSLPRRYLSALRTFVFVHRLRRNG 247
C+HAL ++ R + AL+ + +HRL R+G
Sbjct: 71 CIHALSRRLHKT-RNWTVALKALLVIHRLLRDG 102
>At5g45100.2 68418.m05534 expressed protein
Length = 267
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 141 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC 236
V+ C RC A +V L C H CLCT C
Sbjct: 213 VNGGCKRCGELTA---SVLVLPCRHLCLCTVC 241
>At5g45100.1 68418.m05533 expressed protein
Length = 294
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 141 VDSACMRCRRSFAVYPAVTYLHCGHSCLCTDC 236
V+ C RC A +V L C H CLCT C
Sbjct: 240 VNGGCKRCGELTA---SVLVLPCRHLCLCTVC 268
>At3g12920.1 68416.m01610 expressed protein
Length = 335
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 147 SACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVN 251
S C C + A +V L C H CLC+ C ++N
Sbjct: 285 SMCRSCGKGEA---SVLLLPCRHMCLCSVCGSSLN 316
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 84 EIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYL--HCGHSCLCTDCDETVNV 254
E +K ++ L CN V+ C R + V Y+ CGH+ LCT+C + +V
Sbjct: 31 EALKHLASINLRELCNEAKVER-CRATRDLASCGRFVNYVLNPCGHASLCTECCQRCDV 88
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 102 RNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVN 251
R + L E KA CR V L C H CLC C +V+
Sbjct: 287 RRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVH 336
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 102 RNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVN 251
R + L E KA CR V L C H CLC C +V+
Sbjct: 290 RRVGLEREAQDKAERRRRRMCRNCGEEESCVLLLPCRHLCLCGVCGSSVH 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,479
Number of Sequences: 28952
Number of extensions: 281885
Number of successful extensions: 826
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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