Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120427.Seq
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1547 + 27795664-27795674,27795743-27795892,27796182-277979...    32   0.43 
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424...    31   0.74 
02_04_0532 + 23711530-23711755,23712984-23713093,23713204-237152...    31   0.74 
02_02_0348 - 9233032-9233154,9233233-9233311,9233387-9233511,923...    31   1.3  
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    29   5.2  
08_02_1213 - 25329775-25330227                                         29   5.2  
05_05_0136 - 22631260-22631325,22631735-22631821,22631898-226320...    28   6.9  
02_01_0404 - 2945611-2948802                                           28   6.9  

>08_02_1547 +
           27795664-27795674,27795743-27795892,27796182-27797906,
           27799447-27799546,27799657-27800268,27800399-27800521,
           27800905-27801039,27801108-27801209,27801716-27801778,
           27801854-27802045,27802121-27802258,27802632-27802694,
           27803068-27803466
          Length = 1270

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 244 QLRRHLNSDMGVVMLVEEYFYCLSSCNFKQ 333
           +L RHL+  M +V+LVE Y +CLS    ++
Sbjct: 338 KLHRHLDRKMSLVLLVEHYEHCLSRMRHRE 367


>10_08_0048 -
           14441540-14441620,14442044-14442111,14442275-14442493,
           14442506-14444508,14447541-14448410,14448533-14448576,
           14449920-14450093
          Length = 1152

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 217 SGHTRHSMQQLRRHLNSDMGVVMLVEEYFY-CLSSCNFK 330
           +GH R  +Q+LRRH+N   G+       FY CL SC+ K
Sbjct: 652 NGH-RDEIQKLRRHVNEACGLSESELRQFYDCLLSCHLK 689


>02_04_0532 +
           23711530-23711755,23712984-23713093,23713204-23715298,
           23716092-23716153,23716236-23716277,23716614-23716673,
           23716873-23717010,23717333-23717374,23717452-23717574
          Length = 965

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 244 QLRRHLNSDMGVVMLVEEYFYCLSSCNFKQ 333
           +L R+L+  M +V+LVE Y +CLS   +++
Sbjct: 537 KLHRYLDRKMSLVLLVEHYEHCLSRMRYRE 566


>02_02_0348 -
           9233032-9233154,9233233-9233311,9233387-9233511,
           9233597-9233734,9233802-9233993,9235269-9237209
          Length = 865

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 244 QLRRHLNSDMGVVMLVEEYFYCLSSCNFKQ 333
           +L R+L+  M +V+LVE Y +CLS   +++
Sbjct: 402 KLHRYLDRKMSLVLLVEYYEHCLSRMRYRE 431


>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
            2349688-2350045,2350818-2351177,2351321-2351419,
            2351856-2351948,2352078-2352215,2352389-2352476,
            2352682-2352770,2353113-2353178,2353370-2353481,
            2354702-2354901
          Length = 1185

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 244  QLRRHLNSDMGVVMLVEEYFYCLSSCNFKQ---DAKLALQTLT 363
            +L R L+  M +V+LVE Y +CLS  + ++   DAK +   L+
Sbjct: 979  KLHRLLDRKMSLVILVEHYEHCLSRIHHQEAELDAKASQSVLS 1021


>08_02_1213 - 25329775-25330227
          Length = 150

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 338 PNLRCKRSQTSSR--YPI*WQATTFQRPTW 421
           PNL C RS  +SR  +P+ W     Q  TW
Sbjct: 118 PNLACARSTLASRMAWPVYWSTNFSQNLTW 147


>05_05_0136 -
           22631260-22631325,22631735-22631821,22631898-22632026,
           22632122-22632190,22632271-22632351,22632598-22632702,
           22632786-22633016,22633098-22634272,22634391-22634457,
           22636705-22637778,22638119-22638274,22638827-22638985,
           22639062-22639220,22639306-22639422,22639502-22639612,
           22639690-22640358
          Length = 1484

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 259 LNSDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLTNFESLSDLMA 393
           +NS+MG+  ++++   C +  N   D  L    + N E L+D+++
Sbjct: 569 VNSEMGLTEILQKLKTCCAVLNDSADKSLNRDNIQNEEHLTDILS 613


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +3

Query: 564 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRND 731
           +S+CK  S    I F + NL   ++ L SL    S+C  Q R  ++ F    L ND
Sbjct: 8   HSSCKKCSNRCFIDFLRFNLAFALLLLLSLASPTSSCTEQERSSLLQFLS-GLSND 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,022,444
Number of Sequences: 37544
Number of extensions: 346348
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)