Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120427.Seq
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   4.1  
SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)              29   5.4  
SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)               29   5.4  
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)                  28   7.1  

>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 365 TSSRYPI*WQATTFQRPTWTQTH 433
           T++R+   W  TT  R TWT TH
Sbjct: 249 TTTRHQTTWTTTTRHRTTWTPTH 271


>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1358

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +3

Query: 420  GHKRIRIDGL*VKYHVDVNSYLITQIIN*SNLRNDVICFSKLNSLYE*NSTCKTQSRDDV 599
            G   +   G   K +V  +  L+ ++    N+ +D+   +K+N L++     K     D+
Sbjct: 1136 GFYNLTTTGCSAKVNVSHDMTLVAKV----NVSHDMTLVAKVNVLHDMTLVAKVNVSHDM 1191

Query: 600  ICFSKLNLRND---VICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDV 734
               +K+N+ +D   V  +N  ++     K     D+   +K+N+ +D+
Sbjct: 1192 TLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDMTLVAKVNVSHDM 1239


>SB_59636| Best HMM Match : Ins_element1 (HMM E-Value=4.6)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 564 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 740
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C
Sbjct: 8   NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTC 66



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 564 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVIC 740
           N TCK  +  D +    +   ++V C       N TCK  + DD +    +   ++V C
Sbjct: 30  NVTCKLMASHDNVTCKYMTSDDNVTCKLMASHDNVTCKYMTSDDSVTRKLMASHDNVTC 88


>SB_41815| Best HMM Match : zf-CXXC (HMM E-Value=3.5e-17)
          Length = 906

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -1

Query: 257 CRRSCCMLCRVCPDTRGF---GENHTTANRRACNKVDSE 150
           C R  C  CR C D + F   G    +  +RAC ++  E
Sbjct: 497 CTREDCGECRTCKDMKKFGGPGRMKQSCTKRACTQIKHE 535


>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
          Length = 324

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 124 EFFGKR*IVSLSTLLHARRLAVV*FSPKPRVSGHTRHSMQQLRRHLNSD 270
           ++FG   I  L  L+ A+RLA+  F P P  +  +  ++++ RRH   +
Sbjct: 4   DWFGAN-IAHLQPLIEAKRLALQNFKPNP--TSQSLEALREARRHAKEE 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,084,013
Number of Sequences: 59808
Number of extensions: 455486
Number of successful extensions: 1025
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)